Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,823,983 – 12,824,143 |
Length | 160 |
Max. P | 0.981012 |
Location | 12,823,983 – 12,824,103 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.82 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -27.24 |
Energy contribution | -27.55 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.08 |
Structure conservation index | 0.93 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12823983 120 + 22224390 UUUAAAGUUGAGCCAAUUUUCCGGUUAAUGUUUAUUUGCCAGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUA ....((((((((..........(((.(((....))).)))......(((((..(((((((......))))))).)))))..))))(((((.(((......))).)))))......)))). ( -30.30) >DroSec_CAF1 22040 119 + 1 U-UAAAGUUGAGCCAAUUUUCCGGUUAAUGUUUAUUUGCCAGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAAUUCAUCGGAAACGGAAUCACGUCUCCGACAUUUCGCUUA .-......(((((.........(((.(((....))).)))......(((((..(((((((......))))))).)))))......(((((.(((......))).)))))......))))) ( -29.40) >DroEre_CAF1 30351 119 + 1 U-UAAAGUUGAGCCAAUUUUCCGGUUAAUGUUUCUCUGCCAGUCCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCCCCGACAUUUCGCUUA .-......(((((.((...((.((....((((((............(((((..(((((((......))))))).))))).......((....))))))))....)).))...)).))))) ( -28.00) >DroYak_CAF1 30680 119 + 1 U-UAAAGUUGAGCCAAUUUUCCGGUUAAUGUUUACUUGCCAGUUGAGGUAACUUUGUUUCGAAUUGGCAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUA .-......(((((.........(((.(((......(((((((((((..((....))..)).)))))))))..))).)))......(((((.(((......))).)))))......))))) ( -30.00) >consensus U_UAAAGUUGAGCCAAUUUUCCGGUUAAUGUUUAUUUGCCAGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUA ....((((((((..........(((............)))......(((((..(((((((......))))))).)))))..))))(((((.(((......))).)))))......)))). (-27.24 = -27.55 + 0.31)
Location | 12,823,983 – 12,824,103 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.82 |
Mean single sequence MFE | -32.35 |
Consensus MFE | -30.64 |
Energy contribution | -30.82 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.47 |
Structure conservation index | 0.95 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12823983 120 - 22224390 UAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACUGGCAAAUAAACAUUAACCGGAAAAUUGGCUCAACUUUAAA ..........((((((((((......))))))))))((((((((((.(((((((......)))))))..)))))....((((..(((....)))..))))......)))))......... ( -33.30) >DroSec_CAF1 22040 119 - 1 UAAGCGAAAUGUCGGAGACGUGAUUCCGUUUCCGAUGAAUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACUGGCAAAUAAACAUUAACCGGAAAAUUGGCUCAACUUUA-A ..(((.((..((((((((((......)))))))))).....(((((.(((((((......)))))))..)))))....((((..(((....)))..))))....)).)))........-. ( -31.20) >DroEre_CAF1 30351 119 - 1 UAAGCGAAAUGUCGGGGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGGACUGGCAGAGAAACAUUAACCGGAAAAUUGGCUCAACUUUA-A ..........(((((..(((......)))..)))))((((((((((.(((((((......)))))))..)))))....((((..((......))..))))......))))).......-. ( -32.80) >DroYak_CAF1 30680 119 - 1 UAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUGCCAAUUCGAAACAAAGUUACCUCAACUGGCAAGUAAACAUUAACCGGAAAAUUGGCUCAACUUUA-A ..........((((((((((......))))))))))((((((((((....)))))))))).....((((((.((....((((..(((....)))..))))......))...)))))).-. ( -32.10) >consensus UAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACUGGCAAAUAAACAUUAACCGGAAAAUUGGCUCAACUUUA_A ..........((((((((((......))))))))))((((((((((.(((((((......)))))))..)))))....((((..(((....)))..))))......)))))......... (-30.64 = -30.82 + 0.19)
Location | 12,824,023 – 12,824,143 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -30.80 |
Energy contribution | -31.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.94 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12824023 120 + 22224390 AGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUAGAUAGUUUUGACUUGUCUGCGAAGUUCAGUUUCAAAUUGC ......(((((..(((((((......))))))).)))))((((..(((((.(((......))).))))).(((((((..(((((((....)).))))))))))))..))))......... ( -33.50) >DroSec_CAF1 22079 120 + 1 AGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAAUUCAUCGGAAACGGAAUCACGUCUCCGACAUUUCGCUUAGAUAGUUUUGAGUUGUCUGCGAAGUUCAGUUUAAAAUUGC ......(((((..(((((((......))))))).)))))......(((((.(((......))).))))).(((((((..((((((.......)))))))))))))............... ( -32.80) >DroEre_CAF1 30390 120 + 1 AGUCCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCCCCGACAUUUCGCUUAGAUAGUUUUGACUUGUCUGCGAAGUUAAGUUUCAAAUUGC ......(((((..(((((((......))))))).))))).......((....))(((((..(((...)))(((((((..(((((((....)).))))))))))))...)))))....... ( -32.30) >DroYak_CAF1 30719 120 + 1 AGUUGAGGUAACUUUGUUUCGAAUUGGCAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUAGAUAGUUUCGACUUGUCUGCGAAGUUCAGAUUCCAAUUGC (((((.((..((..((((((((((((....))))))..........((....)))))))).))..))((.(((((((..(((((((....)).))))))))))))))......))))).. ( -32.60) >consensus AGUUCAGGUAACUUUGUUUCGAAUUGGAAACAAUUUACCAACUCAUCGGAAACGGAAACACGUCUCCGACAUUUCGCUUAGAUAGUUUUGACUUGUCUGCGAAGUUCAGUUUCAAAUUGC ......(((((..(((((((......))))))).)))))......(((((.(((......))).))))).(((((((..((((((.......)))))))))))))............... (-30.80 = -31.30 + 0.50)
Location | 12,824,023 – 12,824,143 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -32.01 |
Consensus MFE | -28.64 |
Energy contribution | -28.95 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.31 |
Structure conservation index | 0.89 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12824023 120 - 22224390 GCAAUUUGAAACUGAACUUCGCAGACAAGUCAAAACUAUCUAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACU .........((((....((((((((..(((....))).)))..)))))..((((((((((......)))))))))).))))(((((.(((((((......)))))))..)))))...... ( -32.80) >DroSec_CAF1 22079 120 - 1 GCAAUUUUAAACUGAACUUCGCAGACAACUCAAAACUAUCUAAGCGAAAUGUCGGAGACGUGAUUCCGUUUCCGAUGAAUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACU .................((((((((.............)))..)))))..((((((((((......)))))))))).....(((((.(((((((......)))))))..)))))...... ( -29.12) >DroEre_CAF1 30390 120 - 1 GCAAUUUGAAACUUAACUUCGCAGACAAGUCAAAACUAUCUAAGCGAAAUGUCGGGGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGGACU .........(((((...((((((((..(((....))).)))..)))))..(((((..(((......)))..))))))))))(((((.(((((((......)))))))..)))))...... ( -33.10) >DroYak_CAF1 30719 120 - 1 GCAAUUGGAAUCUGAACUUCGCAGACAAGUCGAAACUAUCUAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUGCCAAUUCGAAACAAAGUUACCUCAACU ......((.........((((((((..(((....))).)))..)))))..((((((((((......))))))))))((((((((((....))))))))))............))...... ( -33.00) >consensus GCAAUUUGAAACUGAACUUCGCAGACAAGUCAAAACUAUCUAAGCGAAAUGUCGGAGACGUGUUUCCGUUUCCGAUGAGUUGGUAAAUUGUUUCCAAUUCGAAACAAAGUUACCUGAACU .................((((((((..(((....))).)))..)))))..((((((((((......)))))))))).....(((((.(((((((......)))))))..)))))...... (-28.64 = -28.95 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:11 2006