Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,419,845 – 1,419,946 |
Length | 101 |
Max. P | 0.806103 |
Location | 1,419,845 – 1,419,946 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.49 |
Mean single sequence MFE | -22.22 |
Consensus MFE | -12.76 |
Energy contribution | -12.65 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.15 |
Mean z-score | -1.94 |
Structure conservation index | 0.57 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1419845 101 + 22224390 ------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU ------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90) >DroSec_CAF1 26253 101 + 1 ------CCUUGC-------------CCCAUAAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU ------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90) >DroSim_CAF1 16892 101 + 1 ------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU ------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90) >DroEre_CAF1 21540 109 + 1 ------CCUUGCCCCUUGCCCCUGCCCCAUGAAUUUAUUAGAAAUUCAGGAGUGAAACUCUCGGAUUUCUACACACUCGAAUCGAAUCGACUCG-----ACUCGUCCAGGCGCAGCACGU ------...(((....(((.((((..............(((((((((..(((.....)))..)))))))))......(((.((((......)))-----).)))..)))).))))))... ( -29.90) >DroWil_CAF1 90014 97 + 1 AACCCCCCAUGC-------------UCUAUGAAUUUAUUAGAAAUUCAAGAGUGAAAUUCUCGGAUUUCUUAACGCAC-ACCCCCUUC-ACCUG---CCACACACACAGU-----CCCAU ..........((-------------(((.(((((((.....))))))))))))((((((....)))))).....(((.-.........-...))---)............-----..... ( -13.82) >DroYak_CAF1 17933 92 + 1 ------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCGACUCUGUUCGACUCG-----ACC----AGGGCGCAGCACGU ------..((((-------------(((..........(((((((((.((((.....)))).))))))))).....((((.((.....)).)))-----)..----.))).))))..... ( -26.90) >consensus ______CCUUGC_____________CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCG___CCACUCGUCCAGGCGCAGCACGU ......................................(((((((((.((((.....)))).)))))))))................................................. (-12.76 = -12.65 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:52 2006