Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,796,055 – 12,796,149 |
Length | 94 |
Max. P | 0.974892 |
Location | 12,796,055 – 12,796,149 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -15.34 |
Energy contribution | -15.38 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.24 |
Mean z-score | -2.32 |
Structure conservation index | 0.46 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12796055 94 + 22224390 ----UUCGCCGCCAGCACGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG--GAAAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA ----((((((((((((((...-----------(((((((((((.....))))(((((.((((...))))--.)))))))))))))))))).))-.)))-)))-------........... ( -37.20) >DroSim_CAF1 2377 94 + 1 ----UUAGCCGCCAGCUCGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG--GAAAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA ----...((((.......(((-----------(((((((((.(((((.....(((((.((((...))))--.)))))(((.....))))))))-))))-)))-------))))).)))). ( -36.50) >DroEre_CAF1 2607 93 + 1 ----UUCGC-GACACCUCGUG-----------UUUUCGCUUUGCUCAUUAAAACUUUGUACCGCCGAUG--GAGAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCGGCA ----.....-....((..(((-----------(((((((((.(((((.((....((((((((.((...)--).).)))))))...)).)))))-))))-)))-------)))))..)).. ( -30.60) >DroYak_CAF1 2343 100 + 1 GAUUUUCGCAGGCAGCUCGUG-----------UUUUUGCUUUGCUCAUUAAAACUUUGCACCGCCGAUGGGGAGAGUGCGAAAAGUGCUGAGC-AGGC-GAA-------AAUAUCCAGCA ..............(((.(((-----------(((((((((.(((((.((....((((((((.((.....)).).)))))))...)).)))))-))))-)))-------)))))..))). ( -33.50) >DroAna_CAF1 2501 107 + 1 ----AUGCCCGGCAGCACCGGCUUUUUGGAAUUUUUCGCUUUGCUCAUUAAAAGUUUGA-------GGA--AAAAGUGUGGAAAGUGCCGAGCGAAGCAGAAACGACCCAAAAACCAGAA ----..(((.((.....)))))(((((((....(((((((((((((......(.(((..-------...--.))).)..((......))))))))))).))))....)))))))...... ( -28.20) >consensus ____UUCGCCGCCAGCUCGUG___________UUUUCGCUUUGCUCAUUAAAACUUUGCACCGCCGGUG__GAAAGUGCGAAAAGUGCUGAGC_AGGC_GAA_______AAUAUCCGGCA ..................................(((((((.(((((.((....(((((((..............)))))))...)).))))).)))).))).................. (-15.34 = -15.38 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:57 2006