Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,782,151 – 12,782,261 |
Length | 110 |
Max. P | 0.994039 |
Location | 12,782,151 – 12,782,261 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.53 |
Mean single sequence MFE | -15.28 |
Consensus MFE | -14.30 |
Energy contribution | -14.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.94 |
SVM decision value | 2.45 |
SVM RNA-class probability | 0.994039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12782151 110 + 22224390 CGCAACUCAGCGACUCGGUCACAUUCAUUAACGGCACCUACGCCGCCACUUACAAUUUACCCGAAAAAAAAAAAAACAAAAAUGAAAAAAAAUCACCCAUAUUAACCGAA (((......)))..(((((............((((......)))).....................................(((.......))).........))))). ( -14.30) >DroSec_CAF1 5509 104 + 1 CGCAACUCAGCGACUCGGUCACAUUCAUUCACGGCACAUACGCCGCCACUUACAAUUUACCCGAAAAA------AACAAAAAUGAAAAAAAAUCACCCAUAUUAACCGAA (((......)))..(((((............((((......)))).......................------........(((.......))).........))))). ( -14.30) >DroEre_CAF1 5734 104 + 1 CGCAACUCAGCGACUCGGUCACAUUCACACACGGCUCAUAUGCCGCCACUUACAAUUUACCCGAAAAAA-----ACAAAAAAUGA-UAAAAAUCAUCCAUAUUAACCGAA (((......)))..(((((............((((......))))........................-----.......((((-(....)))))........))))). ( -17.10) >DroYak_CAF1 7048 104 + 1 CGCAACUCAGCGACUCGGUCACAUUCAUACACGGCUCAUACGCCGCCACUUACAAUUUACCCGAAAAAA-----AACAUAAAUGA-AUAAAAUCAUCCAUAUUAACCGAA (((......)))..(((((............((((......))))........................-----.......((((-......))))........))))). ( -15.40) >consensus CGCAACUCAGCGACUCGGUCACAUUCAUACACGGCACAUACGCCGCCACUUACAAUUUACCCGAAAAAA_____AACAAAAAUGA_AAAAAAUCACCCAUAUUAACCGAA (((......)))..(((((............((((......)))).....................................(((.......))).........))))). (-14.30 = -14.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:51 2006