Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,419,210 – 1,419,306 |
Length | 96 |
Max. P | 0.843765 |
Location | 1,419,210 – 1,419,306 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -21.08 |
Energy contribution | -21.57 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1419210 96 + 22224390 --ACGCAGAGACAACAGUGAGUCGUUGUGGUCCCCGACUCCUGCCC------UGC------CGCCGACACAUCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC --..((((.(....(((.((((((..........))))))))).))------)))------.((((.(((....)))..))))........................... ( -24.20) >DroSec_CAF1 25633 96 + 1 --ACGCAGAGACAACAGUGAGUCGACGUGGUCCCCGACUCCUGAAC------UGU------CGCCGCCACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC --.....(((....(((.((((((..........)))))))))...------(((------.((((.(((....)))..)))))))...))).................. ( -24.80) >DroSim_CAF1 16257 96 + 1 --ACGCAGAGACAACAGUGAGUCGUCGUGGUCCCCGACUCCUGCCC------UGU------CGCCGACACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC --.....((((((.(((.((((((..(....)..)))))))))...------)))------)((((.(((....)))..))))...............)).......... ( -25.90) >DroYak_CAF1 17316 107 + 1 AAGUGCAGAGACAACAGUGAGUC---GUGGUCCCCGACUCCUCCUCCUCCCCUCCCUCCCAUGCCGACACACCAGUGCCCGGCUCAACCCUCACCAAAACACCAAAUCAC ..(((..(((.....((.(((((---(.(....)))))))))....))).............((((.(((....)))..))))................)))........ ( -22.20) >consensus __ACGCAGAGACAACAGUGAGUCGUCGUGGUCCCCGACUCCUGCCC______UGC______CGCCGACACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC .......(((....(((.((((((..........)))))))))...................((((.(((....)))..))))......))).................. (-21.08 = -21.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:51 2006