Locus 4908

Sequence ID X_DroMel_CAF1
Location 12,776,685 – 12,776,805
Length 120
Max. P 0.992079
window8005

overview

Window 5

Location 12,776,685 – 12,776,805
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.06
Mean single sequence MFE -38.08
Consensus MFE -35.04
Energy contribution -33.98
Covariance contribution -1.05
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.92
SVM decision value 2.31
SVM RNA-class probability 0.992079
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12776685 120 + 22224390
ACUAUCUGCCGCAAACCAUGACGCAGGAGGAGAUGCGAUCGCUCUUCUCCAGCAUCGGUGAGCUCGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
..(((.((((.((((((.(((.((.((((((((.((....)))))))))).((((((((..((.(....)..))..))))))))........)).))))))...))))))).)))..... ( -43.30)
>DroPse_CAF1 92 120 + 1
ACUAUCUGCCACAGACCAUGACCCAAGAGGAGAUGCGAUCGCUCUUCUCGAGUAUCGGUGAGCUCGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
..(((.((((.((((((.(((..(..(((((((.((....)))))))))..((((((((..((.(....)..))..))))))))........)..))))))...))))))).)))..... ( -36.30)
>DroGri_CAF1 80 120 + 1
ACUAUCUGCCACAAACCAUGACGCAAGAGGAGAUGCGUUCGCUCUUCUCUAGCAUUGGUGAGUUGGAGAGUUGCAAACUGGUGCGAGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
..(((.((((.((((((........((((((((.((....)))))))))).((((..((..((.........))..))..))))(((((...))))).)))...))))))).)))..... ( -35.40)
>DroSec_CAF1 125 120 + 1
UUUAUCUGCCGCAGACCAUGACGCAGGAGGAGAUGCGAUCGCUCUUCUCCAGCAUCGGUGAGCUGGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
((((((((((..((((..((.(((.((((((((.((....)))))))))).((((((((..((.........))..))))))))))).))..))))..))).....)))))))....... ( -42.10)
>DroWil_CAF1 92 120 + 1
ACUAUCUGCCACAAACCAUGACGCAAGAGGAGAUGCGAUCGCUCUUCUCCAGCAUUGGUGAGUUGGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUGAC
..(((.((((.((((((....(....)..(((((...(((((..(((((((((........)))))))))..(((......))))))))...))))).)))...))))))).)))..... ( -37.30)
>DroPer_CAF1 92 120 + 1
ACUAUCUGCCACAGACCAUGACCCAAGAGGAGAUGCGAUCGCUCUUUUCGAGUAUCGGUGAGCUCGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
....((((...)))).....(((((((..(((((...(((((((.....))((((((((..((.(....)..))..)))))))))))))...)))))......))))))).......... ( -34.10)
>consensus
ACUAUCUGCCACAAACCAUGACGCAAGAGGAGAUGCGAUCGCUCUUCUCCAGCAUCGGUGAGCUCGAGAGUUGCAAACUGGUGCGUGAUAAAGUCUCAGGUAAUUUGGGUAAAUAUUAAC
..(((.((((.((((((.(((..(..(((((((.((....)))))))))..((((((((..((.........))..))))))))........)..))))))...))))))).)))..... (-35.04 = -33.98 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:48 2006