Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,763,965 – 12,764,058 |
Length | 93 |
Max. P | 0.900487 |
Location | 12,763,965 – 12,764,058 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -14.68 |
Consensus MFE | -13.08 |
Energy contribution | -13.08 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.89 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12763965 93 - 22224390 ACACUUGCUUCACACACACACACACA-GCGGCAGAGAGUCCUUUGCAC--------A--CACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU ..........................-((.(((((((((....(((..--------.--............)))..))))))).))....))............ ( -15.86) >DroSec_CAF1 19254 96 - 1 ACACUUGCCACACUCACACACACACUUACGGCAGAGAGUCCUUUGCAC--------ACACACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....((((....................))))(((((..(..(((..--------...............)))..)..)))))((....))............ ( -14.48) >DroEre_CAF1 19239 97 - 1 ACACUUGCUUCUCACAC----ACACA-ACGGCAGAGAGUCCUUUGCACUAACACAUA--CAGAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....((((........----.(...-..)(((((((((....(((...........--............)))..))))))).))...))))........... ( -13.70) >consensus ACACUUGCUUCACACACACACACACA_ACGGCAGAGAGUCCUUUGCAC________A__CACAUACACACAGCAUCGCUCUCUCGCACCAGCACACAUGAAAAU .....(((..............(......)(((((((((....(((.........................)))..))))))).))....)))........... (-13.08 = -13.08 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:47 2006