Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,763,588 – 12,763,681 |
Length | 93 |
Max. P | 0.637604 |
Location | 12,763,588 – 12,763,681 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -10.80 |
Consensus MFE | -8.84 |
Energy contribution | -8.62 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.09 |
Mean z-score | -1.09 |
Structure conservation index | 0.82 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12763588 93 + 22224390 AACAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAGAGGA ....................((.((..............((.((..(((((((......)))))))...)).))..--............)))). ( -9.49) >DroGri_CAF1 31566 90 + 1 UGACAAC-CACC-CCAAAACACGGAAAAUUAUAGGAAUUGGGUCAAAAGAUAAACGGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAGAAGAA- .......-....-((.......)).....((((((..((((......((((((......))))))))))...))))--))..............- ( -10.30) >DroSec_CAF1 18874 93 + 1 AGCAACAUCAUCAUAAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAAAUGA .(((......((.......((((...............))))....(((((((......)))))))...)).....--))).............. ( -10.46) >DroEre_CAF1 18856 91 + 1 AGCAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGCAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAGAA-- .(((......((.......((((...............))))....(((((((......)))))))...)).....--)))............-- ( -10.46) >DroMoj_CAF1 29580 83 + 1 AAAAAAA-UAUC-ACAA--------AAAUUAAACGAAUUGGGUCAAAAGAUAAGCGGAAUUAUCUUGAAGAGCCUA--UGCGAAAAAUGAGAAAC .......-....-....--------........((....((.((..(((((((......)))))))...)).))..--..))............. ( -12.70) >DroAna_CAF1 20512 91 + 1 UGCCACAACAUCAUCA----UCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUUUUUGCAAAAAAAAAGCAAA ................----.............((((..((.((..(((((((......)))))))...)).))..))))............... ( -11.40) >consensus AGCAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA__UGCAAAAAAAAAGAAAA .......................................((.((..(((((((......)))))))...)).))..................... ( -8.84 = -8.62 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:46 2006