Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,758,836 – 12,758,932 |
Length | 96 |
Max. P | 0.580946 |
Location | 12,758,836 – 12,758,932 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.35 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -17.34 |
Energy contribution | -17.57 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.17 |
Mean z-score | -1.36 |
Structure conservation index | 0.74 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12758836 96 - 22224390 UGAGACUGAUAACGAGUCACCCUGCAGGAAUUGCGGAUGGCUUUACAUUUCAAGGAAGUUGACUCUAGUAGCUAU--UGCUCAAUAUAAGAGCCAUAC ...((((.......))))...((((((...))))))((((((((.....((((.....)))).....(.(((...--.))))......)))))))).. ( -21.20) >DroEre_CAF1 14899 95 - 1 UGAGACUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACAUUUCAAGGAAGUUGACUUAAGCAGAUAUCCUGCUGAAUAUGAAAGCCA--- (((((.((.(((...(((((((.(((.....)))))))))).)))))))))).((...........(((((.....)))))...........)).--- ( -25.95) >DroYak_CAF1 16312 82 - 1 UGAGUCUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACACUUCAAGGAAGUUGCCUAAAGUAGAUAUCCUGCUG---------------- ..(((..((((.(..(((((((.(((.....)))))))))).....((((..(((......))).)))).).))))..))).---------------- ( -23.40) >consensus UGAGACUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACAUUUCAAGGAAGUUGACUAAAGUAGAUAUCCUGCUGAAUAU_A_AGCCA___ .(((...........(((((((.((((...))))))))))).....(((((...)))))...))).(((((.....)))))................. (-17.34 = -17.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:43 2006