Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,755,159 – 12,755,259 |
Length | 100 |
Max. P | 0.516353 |
Location | 12,755,159 – 12,755,259 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.31 |
Mean single sequence MFE | -15.41 |
Consensus MFE | -11.61 |
Energy contribution | -12.23 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.16 |
Mean z-score | -1.40 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12755159 100 + 22224390 AUCCUAGCUCUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCAACCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC ....................(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... ( -16.51) >DroSec_CAF1 10550 91 + 1 ---------CUUCCCCACCAGUAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC ---------.........(((...(((((..........((((.((......)).)))).........)))))...(((((....)))))..)))..... ( -14.71) >DroSim_CAF1 7055 91 + 1 ---------CUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC ---------...........(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... ( -16.51) >DroYak_CAF1 12522 86 + 1 ---------CUGCCCCACCAGUAUUGUCCAUGUAUACCAGCAUCUGCAUCCCCG-----CCACCCAUCGGAUAUCUCUCAGCUGACUGACUCCUGCAGAC ---------((((...........(((((((((......))))..((......)-----)........)))))....((((....)))).....)))).. ( -13.90) >consensus _________CUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC ....................(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... (-11.61 = -12.23 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:42 2006