Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,743,888 – 12,744,000 |
Length | 112 |
Max. P | 0.886711 |
Location | 12,743,888 – 12,744,000 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.28 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -14.84 |
Energy contribution | -16.04 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.90 |
Structure conservation index | 0.47 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12743888 112 - 22224390 UGCAUUCGUCAGCUAGAGAUGGC-AGACGGCG----GUGG-GGCUGAGCAGCCGAAAAUGCCUAGAUUUGGCUAUUUCAAA--UAAGUCCACAAUAUUAUAUGGGAAUGAACCAUAUUUU .((...((((.((((....))))-.)))))).----((((-((((....))))((((..(((.......)))..))))...--.....))))......((((((.......))))))... ( -34.00) >DroSec_CAF1 2735 109 - 1 UGCUUUCGUCAGCUAGAGAUGGCCAAACGGCG----GUGGGGGCUGAGCAGCCCAAAAUGGCUAGGUUCGGCUAUAUUUUG--UGGACUC-----AUUGUAUGUUAAUGAACCAUAUUUU .(((......))).....((((((.((((((.----((..(((((....)))))...)).)))..))).))))))....((--(((..((-----((((.....)))))).))))).... ( -34.50) >DroSim_CAF1 2703 112 - 1 UGCGUUCGUCAGCUAGAGAUGGC-AGACGGCG----GUGG-GGCUGAGCAGUCGAAAAUGGCUAGAUUUGGCUAUUUUAUA--UAAGUCCACAAUAUUGAAUGGGAAUGAACCAUAUUUU ..(((.((((.((((....))))-.)))))))----((((-((((....)))).((((((((((....))))))))))...--.....))))........((((.......))))..... ( -33.20) >DroEre_CAF1 2663 94 - 1 UGCAUUCGUCAGCUAGAGAUGGC-AGACGGCC----GUAG-GACUGAGUAGCCGCAAAUGGCUAGAUUUGGCUAUUUUAAA--UUUGGCUACAAUAAGAAAU------------------ ....(((.((((((....(((((-.....)))----)).)-).))))(((((((.(((((((((....)))))))))....--..))))))).....)))..------------------ ( -27.90) >DroYak_CAF1 2668 100 - 1 UGCGUUCGUCAGCUAGAGAUGGC-AGACUGCAUUAAGUUG-GGCUAGGCAGCCAAAAAUGGCCAGAUUUGGCUAUUUUAUAUAUAUGGCCGGAAUUAAAUCU------------------ ((((...(((.((((....))))-.)))))))((((.((.-(((((........(((((((((......))))))))).......))))).)).))))....------------------ ( -29.16) >consensus UGCAUUCGUCAGCUAGAGAUGGC_AGACGGCG____GUGG_GGCUGAGCAGCCGAAAAUGGCUAGAUUUGGCUAUUUUAUA__UAAGGCCACAAUAUUAUAUG__AAUGAACCAUAUUUU .((..((....((((....))))..))..)).....((((.((((....)))).(((((((((......)))))))))..........))))............................ (-14.84 = -16.04 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:41 2006