Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,418,932 – 1,419,026 |
Length | 94 |
Max. P | 0.740683 |
Location | 1,418,932 – 1,419,026 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -17.19 |
Consensus MFE | -13.65 |
Energy contribution | -13.89 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.40 |
Structure conservation index | 0.79 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1418932 94 + 22224390 AUUGCUUUCAAAACAACCAUGCACAGCAACCCACACACACGCACACGUCCAAUAAUACGGCCACUGAGACAAGGACCCAAGUCCUUGGUCUUUG .(((((..((.........))...)))))................(((........)))......(((((((((((....)))))).))))).. ( -15.00) >DroSec_CAF1 25355 94 + 1 AUUGCUCUCAAAACAACCAUGCACAGCAACCCACACACACGCACACGUCCAAUAAUACGGCCACUGAGCCAAGGACCCAAGUCCUUGGUCUUUG .(((((..((.........))...)))))................(((........)))......(((((((((((....)))))))).))).. ( -17.10) >DroSim_CAF1 15978 94 + 1 AUUGCUCUCAAAACAACCAUGCACAGCAACCCACACACACGCACACGUCCAAUAAUACGGCCACUGAGCCAAGGACCCAAGUCCUUGGUCUUUG .(((((..((.........))...)))))................(((........)))......(((((((((((....)))))))).))).. ( -17.10) >DroEre_CAF1 20669 80 + 1 AUUGCUCUCAAAACAACCACGCAC--------------ACGCAUACGUCCAAUAAUAUGGCCACUGAGCCAAGGACCCAAGUCCUUGGUCUUUG ......((((..........((..--------------..))....(.(((......))).)..))))((((((((....))))))))...... ( -18.60) >DroYak_CAF1 17006 94 + 1 AUUGCUCUCAAAACAACCAUGCACACACACAGACGCAUACGCACACGUCCAAUAAUAUGGCCACUGAGGCAAGGACCCAAGUCCUUGGUCUUUG ..(((...............)))....((.((((((....))....(.(((......))).).......(((((((....))))))))))).)) ( -18.16) >consensus AUUGCUCUCAAAACAACCAUGCACAGCAACCCACACACACGCACACGUCCAAUAAUACGGCCACUGAGCCAAGGACCCAAGUCCUUGGUCUUUG ......((((..........((..................))....(.((........)).)..))))((((((((....))))))))...... (-13.65 = -13.89 + 0.24)
Location | 1,418,932 – 1,419,026 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -23.15 |
Energy contribution | -23.64 |
Covariance contribution | 0.49 |
Combinations/Pair | 1.16 |
Mean z-score | -1.67 |
Structure conservation index | 0.78 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1418932 94 - 22224390 CAAAGACCAAGGACUUGGGUCCUUGUCUCAGUGGCCGUAUUAUUGGACGUGUGCGUGUGUGUGGGUUGCUGUGCAUGGUUGUUUUGAAAGCAAU ((((((((((((((....)))))(((..(((..(((.(((...((.(((....))).)).))))))..))).))))))))..))))........ ( -28.20) >DroSec_CAF1 25355 94 - 1 CAAAGACCAAGGACUUGGGUCCUUGGCUCAGUGGCCGUAUUAUUGGACGUGUGCGUGUGUGUGGGUUGCUGUGCAUGGUUGUUUUGAGAGCAAU .......(((((((....)))))))((.(((..(((.(((...((.(((....))).)).))))))..))).))...(((((((...))))))) ( -31.90) >DroSim_CAF1 15978 94 - 1 CAAAGACCAAGGACUUGGGUCCUUGGCUCAGUGGCCGUAUUAUUGGACGUGUGCGUGUGUGUGGGUUGCUGUGCAUGGUUGUUUUGAGAGCAAU .......(((((((....)))))))((.(((..(((.(((...((.(((....))).)).))))))..))).))...(((((((...))))))) ( -31.90) >DroEre_CAF1 20669 80 - 1 CAAAGACCAAGGACUUGGGUCCUUGGCUCAGUGGCCAUAUUAUUGGACGUAUGCGU--------------GUGCGUGGUUGUUUUGAGAGCAAU ((..((((((((((....)))))))).))..)).(((......)))((((((....--------------)))))).(((((((...))))))) ( -26.00) >DroYak_CAF1 17006 94 - 1 CAAAGACCAAGGACUUGGGUCCUUGCCUCAGUGGCCAUAUUAUUGGACGUGUGCGUAUGCGUCUGUGUGUGUGCAUGGUUGUUUUGAGAGCAAU ........((((((....))))))(((((((..(((((......((((((((....))))))))((......)))))))..)..)))).))... ( -29.60) >consensus CAAAGACCAAGGACUUGGGUCCUUGGCUCAGUGGCCGUAUUAUUGGACGUGUGCGUGUGUGUGGGUUGCUGUGCAUGGUUGUUUUGAGAGCAAU ......((((((((....))))))))(((((..(((((........(((....)))..(((..(....)..))))))))..)..))))...... (-23.15 = -23.64 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:50 2006