Locus 49

Sequence ID X_DroMel_CAF1
Location 223,981 – 224,098
Length 117
Max. P 0.783892
window60

overview

Window 0

Location 223,981 – 224,098
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -23.44
Consensus MFE -18.65
Energy contribution -18.61
Covariance contribution -0.04
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value 0.57
SVM RNA-class probability 0.783892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 223981 117 - 22224390
AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUACAAAUAAUUUCAAUGCCGUAUCAUCCAACCAGAAUGCA-AUUGUCUG
....((((..((((((((((((........((.......))........)))))))))..((((..((((.......))))...)))).................))).-.))))... ( -25.79)
>DroSec_CAF1 18869 115 - 1
AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGGUA---UCCAACUAGAGUGCACAUUUGCUG
........(((((((((.((((........((.......))........))))(((((.(((........((...............))..---.....))).))))).))))))))) ( -28.01)
>DroSim_CAF1 15759 115 - 1
AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGAUA---UCCAACUAGAGUGCACAUUUGCUG
........(((((((((.((((........((.......))........))))(((((.(((......(((((...........)).))).---.....))).))))).))))))))) ( -28.29)
>DroEre_CAF1 19765 105 - 1
AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCUGCACUGUGGCAAAAAAUCCAAAUAAUUUCUAUGCGG-------------CAAUUCAAAUUUUCUU
..........((((((((((((........((.......))........))))))))).(((........)))...........)))..-------------................ ( -18.79)
>DroYak_CAF1 20386 105 - 1
AAUUACAACAGCAAGUGCGGCGAACUAAUGACAACUACAGUAGCAAUUGCUCUGCACUGUGGCAAAAACUGUAGAUAAACUACCCAUAA-------------UAAUUCAAAUUUUCCU
..........((.((((((((((.(((.((.......)).)))...)))))..)))))...)).......((((.....))))......-------------................ ( -16.30)
>consensus
AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGGUA___UCCAAC_AGAAUGCAAAUUUUCUG
..........((.(((((((((........((.......))........)))))))))...))....................................................... (-18.65 = -18.61 +  -0.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:20 2006