| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,732,607 – 12,732,721 |
| Length | 114 |
| Max. P | 0.708270 |
| Location | 12,732,607 – 12,732,721 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -5.54 |
| Energy contribution | -7.30 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.19 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12732607 114 - 22224390 ACA----UAUGUUAAUUUCCCAACUAACGUGUUUAUCCUUAACUGACUG--GGUCAGGGUUAGUUGUCAAUUGAAUUGGAAACAAGUAGGUUUUGAGCAAUCCCCAACAGCUAACACACA ...----...((((..........))))((((..........(((((..--.))))).(((((((((........(((....)))...((....((....)).)).))))))))))))). ( -24.40) >DroSec_CAF1 85231 116 - 1 AAA----UAUGUUAAUUUCCCAACCAACGUGUUUAUCCUUAACUGACUGGGGGUCAGGGUUAGUUGUCAAUGGAAUUGGAAACAAGUAGGUUUUGAGCAAUCCCCACCAGCUAACACACA (((----((((((............)))))))))........(((((.....))))).((((((((....(((..(((....))).........((....)).))).))))))))..... ( -25.90) >DroSim_CAF1 69337 114 - 1 ACA----UAUGUUAAUUUCCCAACCAACGUGGUUAUCCUUAACUGACUGGGGGUCAGGGUUAGUUGUCAAUGGAAUUGGAAACAAGUAGGUUUUGAGCAAUCCCCACCACCUAACACA-- .((----(.((.(((((..((((((.....))))........(((((.....)))))))..))))).)))))...(((....))).(((((...((....))......))))).....-- ( -24.90) >DroEre_CAF1 84068 111 - 1 ACACAUGUAUGUGAAAUUCCUAGCCAACGUGGUGAGCUGUGG----CUGGGG--C-GGAAUACUUGUCAAUGGAACCUGGAACAAGUAGGUUUUGAAAAAUCCCUACUGUUUAACACA-- .........((((....(((((((((..((.....))..)))----))))))--.-.......................(((((.(((((..((....))..))))))))))..))))-- ( -30.80) >DroYak_CAF1 88156 93 - 1 ACA----UGUGGCAAGUUCCUAGCCAACUUGGUAAUCUUUGU----CUUUGG--C-A--------------GGAACUUGAAACAAGUAGGUUUUGAAAAACACCUGCUGUUUAACACA-- ...----((((.(((((((((.((((((..((....))..))----...)))--)-)--------------))))))))(((((.((((((.((....)).)))))))))))..))))-- ( -36.10) >consensus ACA____UAUGUUAAUUUCCCAACCAACGUGGUUAUCCUUAACUGACUGGGGGUCAGGGUUAGUUGUCAAUGGAAUUGGAAACAAGUAGGUUUUGAGCAAUCCCCACCAGCUAACACA__ ................(((..((((.((..............(((((.....)))))..................(((....))))).))))..)))....................... ( -5.54 = -7.30 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:39 2006