Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,728,970 – 12,729,071 |
Length | 101 |
Max. P | 0.996911 |
Location | 12,728,970 – 12,729,071 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.46 |
Mean single sequence MFE | -29.32 |
Consensus MFE | -17.13 |
Energy contribution | -17.33 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.26 |
Mean z-score | -3.29 |
Structure conservation index | 0.58 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12728970 101 + 22224390 ACCGAAAC----------CUCGCGGAUUUUGCUUACUAAGAAGAUACAU--AUUC-UA------CAUAUGUAUGAAAACCAACAAGUGAGCGAAAUGCGAAGGGGUUCCAAAUUUAUUUG ...(.(((----------(((.((.((((((((((((......((((((--((..-..------.))))))))(.....)....)))))))))))).))..)))))).)........... ( -29.10) >DroSec_CAF1 81615 102 + 1 AGCGAAAC----------CCCGUGGAUUUUGCUUACUAAGAAGAUAAAU--AUACAUA------CAUAUGUAUGAAAUCCAACGAGUGAGCGAAAUGCGAAGGGGUUCCAAAUUUAUUUG ...(.(((----------(((.((.((((((((((((.....(((...(--((((((.------...)))))))..))).....)))))))))))).))..)))))).)........... ( -32.90) >DroSim_CAF1 65703 102 + 1 ACCGAAAC----------CCCGGGGAUUUUGCUUACUAAGAAGAUAAAU--AUACAUA------CAUAUGUAUGAAAACCAACGAGUGAGCGAAAUGCGAAGGGGUUCCAAAUUUAUUUG ...(.(((----------(((..(.((((((((((((...........(--((((((.------...)))))))..........)))))))))))).)...)))))).)........... ( -31.00) >DroEre_CAF1 80410 120 + 1 ACCGAAACCGUUCGUCGCCUCGCGGAUUUUGCUUACAAAGAAUAUACAUAUGUGCAUAUAUGUAUGUAUGUAUGAAAACCAACAAGUAAACGAAAUGCGAAGAGGUUCCAAACUUAUUUG .........(((.(..(((((.((.((((((.((((.......(((((((((((((....)))))))))))))(.....).....)))).)))))).))..)))))..).)))....... ( -30.70) >DroYak_CAF1 84650 113 + 1 ACCGAAACCGGUGAACACCUCGCUAAUUUUGCUUACAAAGAAUAUA--UAAGUACGUAU-----UGUAUGUAUGAAAAGCAACAAGUAAACGAAAUGCGAAGAGGUUCCAAAUUUAUUUG ((((....))))((((..(((((..((((((.((((.....(((((--(((.......)-----))))))).((.....))....)))).))))))))).))..))))............ ( -22.90) >consensus ACCGAAAC__________CUCGCGGAUUUUGCUUACUAAGAAGAUAAAU__AUACAUA______CAUAUGUAUGAAAACCAACAAGUGAGCGAAAUGCGAAGGGGUUCCAAAUUUAUUUG ..................(((..(.((((((((((((..............(((((((........)))))))...........)))))))))))).)...)))................ (-17.13 = -17.33 + 0.20)
Location | 12,728,970 – 12,729,071 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.46 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -10.55 |
Energy contribution | -10.15 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.22 |
Mean z-score | -2.28 |
Structure conservation index | 0.41 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12728970 101 - 22224390 CAAAUAAAUUUGGAACCCCUUCGCAUUUCGCUCACUUGUUGGUUUUCAUACAUAUG------UA-GAAU--AUGUAUCUUCUUAGUAAGCAAAAUCCGCGAG----------GUUUCGGU .........((((((((...((((((((.(((.(((....((.....((((((((.------..-..))--))))))...)).))).))).))))..)))))----------))))))). ( -24.00) >DroSec_CAF1 81615 102 - 1 CAAAUAAAUUUGGAACCCCUUCGCAUUUCGCUCACUCGUUGGAUUUCAUACAUAUG------UAUGUAU--AUUUAUCUUCUUAGUAAGCAAAAUCCACGGG----------GUUUCGCU ...........((((((((...(.((((.(((.(((....((((...((((((...------.))))))--....))))....))).))).)))).)..)))----------)))))... ( -25.90) >DroSim_CAF1 65703 102 - 1 CAAAUAAAUUUGGAACCCCUUCGCAUUUCGCUCACUCGUUGGUUUUCAUACAUAUG------UAUGUAU--AUUUAUCUUCUUAGUAAGCAAAAUCCCCGGG----------GUUUCGGU .........((((((((((...(.((((.(((.(((....(((....((((((...------.))))))--....))).....))).))).)))).)..)))----------))))))). ( -24.20) >DroEre_CAF1 80410 120 - 1 CAAAUAAGUUUGGAACCUCUUCGCAUUUCGUUUACUUGUUGGUUUUCAUACAUACAUACAUAUAUGCACAUAUGUAUAUUCUUUGUAAGCAAAAUCCGCGAGGCGACGAACGGUUUCGGU .........((((((((..((((....((((...(((((.(((((((.((((...((((((((......))))))))......)))).).)))))).))))))))))))).)))))))). ( -29.30) >DroYak_CAF1 84650 113 - 1 CAAAUAAAUUUGGAACCUCUUCGCAUUUCGUUUACUUGUUGCUUUUCAUACAUACA-----AUACGUACUUA--UAUAUUCUUUGUAAGCAAAAUUAGCGAGGUGUUCACCGGUUUCGGU .........((((((((.....((((((((((......(((((.....((((...(-----(((..(....)--..))))...)))))))))....)))))))))).....)))))))). ( -24.60) >consensus CAAAUAAAUUUGGAACCCCUUCGCAUUUCGCUCACUUGUUGGUUUUCAUACAUAUG______UAUGUAU__AUGUAUCUUCUUAGUAAGCAAAAUCCGCGAG__________GUUUCGGU ..........((((((......((.....))...(((((.(((((((.(((.................................))).).)))))).)))))..........)))))).. (-10.55 = -10.15 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:37 2006