Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,728,430 – 12,728,541 |
Length | 111 |
Max. P | 0.977750 |
Location | 12,728,430 – 12,728,541 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -14.77 |
Energy contribution | -15.76 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.11 |
Structure conservation index | 0.54 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12728430 111 + 22224390 AGCACAAAACAGAACCGCACAGAACAGCACCGACACAAAUGCAGAUACAAAUGUGGAUGUAUCUUCGCAACAGCAUCAGUAUCUGAAUCUGUAUCUGUAUCUGUAACUGUG ........((((....((........))...........((((((((((.(((..(((........((....)).((((...)))))))..))).)))))))))).)))). ( -28.30) >DroSec_CAF1 81095 105 + 1 AGCACAAAACAGAACCGCACAGAACAGCACCGACACAAAUGCAGAUACAAAUGUGGAUGUAUCUUCGCAGCAGCAGCAGUAUC------UGUAUCUGUAUCUGUAACUGUG ..((((..(((((...((........))......(((.((((((((((...((((((......))))))((....)).)))))------))))).))).)))))...)))) ( -30.70) >DroEre_CAF1 79919 88 + 1 AGCACAAAACAGAA-----CAGAACAGCACCGACACAAAUUCAGAUACAAAUGUGGAUGUAUCUUCGCAUCAGCUUCA------------GU------AUCUGUAACUGUG ..............-----..............((((....(((((((....((.(((((......))))).))....------------))------)))))....)))) ( -18.60) >DroYak_CAF1 84137 94 + 1 AGCACAAAACAGAG-----CAGAACAGCACCGACACAAAUGCAGAUACAAAUGUGGAUGUAUCUUCGCAUCAGCAUCU------------GUAUCUGUAUCUGUAACUGUG ........((((.(-----(......))......(((.(((((((((((.((((.(((((......))))).)))).)------------)))))))))).)))..)))). ( -32.20) >consensus AGCACAAAACAGAA_____CAGAACAGCACCGACACAAAUGCAGAUACAAAUGUGGAUGUAUCUUCGCAUCAGCAUCA____________GUAUCUGUAUCUGUAACUGUG .................................((((..((((((((((..((((((......))))))...((................))...))))))))))..)))) (-14.77 = -15.76 + 1.00)
Location | 12,728,430 – 12,728,541 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -35.27 |
Consensus MFE | -21.39 |
Energy contribution | -23.70 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.03 |
Mean z-score | -4.03 |
Structure conservation index | 0.61 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12728430 111 - 22224390 CACAGUUACAGAUACAGAUACAGAUUCAGAUACUGAUGCUGUUGCGAAGAUACAUCCACAUUUGUAUCUGCAUUUGUGUCGGUGCUGUUCUGUGCGGUUCUGUUUUGUGCU (((((..(((((.((.(.((((((..(((.(((((((((...(((..(((((((........))))))))))...)))))))))))).))))))).))))))).))))).. ( -42.10) >DroSec_CAF1 81095 105 - 1 CACAGUUACAGAUACAGAUACA------GAUACUGCUGCUGCUGCGAAGAUACAUCCACAUUUGUAUCUGCAUUUGUGUCGGUGCUGUUCUGUGCGGUUCUGUUUUGUGCU (((((..(((((((((((.(((------(.(((((.(((...(((..(((((((........))))))))))...))).)))))))))))))))....))))).))))).. ( -35.60) >DroEre_CAF1 79919 88 - 1 CACAGUUACAGAU------AC------------UGAAGCUGAUGCGAAGAUACAUCCACAUUUGUAUCUGAAUUUGUGUCGGUGCUGUUCUG-----UUCUGUUUUGUGCU (((((..(((((.------((------------.((((((((((((((((((((........)))))))....))))))))))....))).)-----)))))).))))).. ( -27.90) >DroYak_CAF1 84137 94 - 1 CACAGUUACAGAUACAGAUAC------------AGAUGCUGAUGCGAAGAUACAUCCACAUUUGUAUCUGCAUUUGUGUCGGUGCUGUUCUG-----CUCUGUUUUGUGCU (((((..(((((..((((.((------------((.((((((((((((((((((........)))))))....)))))))))))))))))))-----.))))).))))).. ( -35.50) >consensus CACAGUUACAGAUACAGAUAC____________UGAUGCUGAUGCGAAGAUACAUCCACAUUUGUAUCUGCAUUUGUGUCGGUGCUGUUCUG_____UUCUGUUUUGUGCU (((((..(((((.........................(((((((((((((((((........)))))))....))))))))))(((((.....)))))))))).))))).. (-21.39 = -23.70 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:35 2006