Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,722,940 – 12,723,038 |
Length | 98 |
Max. P | 0.999531 |
Location | 12,722,940 – 12,723,038 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.72 |
Mean single sequence MFE | -18.83 |
Consensus MFE | -15.61 |
Energy contribution | -15.65 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.05 |
Structure conservation index | 0.83 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12722940 98 + 22224390 UGUUUGUGUGGGCCAAACAAUGGAGAAAUAUUAUAAAGAAAAUAAAGA--AGAAAAAACGAUACAAGAUCCCCAGCAUUUGGCCCAAAUUAAGUUCUGUU ..((((..(((((((((...(((.....((((........))))....--.........(((.....))).)))...)))))))))...))))....... ( -18.50) >DroSec_CAF1 75192 97 + 1 UGUUUGUGUGGGCCAAACAAUGGAGAAAUAUUAAAAAAAAAA-GAAGA--AAAAAAAACGAUACAAGAUCUCCAGCAUUUGGCCCAAAUUAAGUUCUGUU ..((((..(((((((((...((((((................-.....--..................))))))...)))))))))...))))....... ( -22.53) >DroSim_CAF1 60343 98 + 1 UGUUUGUGUGGGGCAAACAAUGGAGAAAUAUUAAAAAAAAAA-AGAGAA-GAAAAAAACGAUACAAGAUCUCCAGCAUUUGGCCCAAAUUAAGUUCUGUU ..((((..((((.((((...((((((................-......-..................))))))...)))).))))...))))....... ( -17.90) >DroEre_CAF1 74496 88 + 1 UGUUUGUGUGGGGCAAACAGUGGAGAAAUAUUAAAUGAAAA------------UAAAACGAAAUAAGAUCUCCAGCAUUUGGCCCAAAUUAGGUUCUGUU ........((((.((((...((((((..((((.........------------........))))...))))))...)))).)))).............. ( -17.13) >DroYak_CAF1 78860 99 + 1 UGUUUGUGUGGGGCAAACAAUGGAGAAAUAUUAAAUGGAAAA-AAAAAAGAAAAAAAACGAAAUAAGAUCUCCAGCAUUUGGCCCAAAUUAAGUUCUGUU ..((((..((((.((((...((((((..((((..........-..................))))...))))))...)))).))))...))))....... ( -18.09) >consensus UGUUUGUGUGGGGCAAACAAUGGAGAAAUAUUAAAAAAAAAA_AAAGA__AAAAAAAACGAUACAAGAUCUCCAGCAUUUGGCCCAAAUUAAGUUCUGUU ..((((..((((.((((...((((((..........................................))))))...)))).))))...))))....... (-15.61 = -15.65 + 0.04)
Location | 12,722,940 – 12,723,038 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 87.72 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -17.23 |
Energy contribution | -17.07 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -3.68 |
Structure conservation index | 0.83 |
SVM decision value | 3.69 |
SVM RNA-class probability | 0.999531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12722940 98 - 22224390 AACAGAACUUAAUUUGGGCCAAAUGCUGGGGAUCUUGUAUCGUUUUUUCU--UCUUUAUUUUCUUUAUAAUAUUUCUCCAUUGUUUGGCCCACACAAACA ..............((((((((((..((((((..(((((...........--.............)))))....))))))..))))))))))........ ( -24.96) >DroSec_CAF1 75192 97 - 1 AACAGAACUUAAUUUGGGCCAAAUGCUGGAGAUCUUGUAUCGUUUUUUUU--UCUUC-UUUUUUUUUUAAUAUUUCUCCAUUGUUUGGCCCACACAAACA ..............((((((((((..((((((....((((..........--.....-...........)))).))))))..))))))))))........ ( -24.47) >DroSim_CAF1 60343 98 - 1 AACAGAACUUAAUUUGGGCCAAAUGCUGGAGAUCUUGUAUCGUUUUUUUC-UUCUCU-UUUUUUUUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACA ..............((((.(((((..((((((....((((..........-......-...........)))).))))))..))))).))))........ ( -17.33) >DroEre_CAF1 74496 88 - 1 AACAGAACCUAAUUUGGGCCAAAUGCUGGAGAUCUUAUUUCGUUUUA------------UUUUCAUUUAAUAUUUCUCCACUGUUUGCCCCACACAAACA ..............((((.(((((..((((((...((((........------------.........))))..))))))..))))).))))........ ( -18.93) >DroYak_CAF1 78860 99 - 1 AACAGAACUUAAUUUGGGCCAAAUGCUGGAGAUCUUAUUUCGUUUUUUUUCUUUUUU-UUUUCCAUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACA ..............((((.(((((..((((((...((((..................-..........))))..))))))..))))).))))........ ( -18.39) >consensus AACAGAACUUAAUUUGGGCCAAAUGCUGGAGAUCUUGUAUCGUUUUUUUU__UCUUU_UUUUUUUUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACA ..............((((.(((((..((((((..........................................))))))..))))).))))........ (-17.23 = -17.07 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:34 2006