Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,716,525 – 12,716,628 |
Length | 103 |
Max. P | 0.718834 |
Location | 12,716,525 – 12,716,628 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.06 |
Mean single sequence MFE | -18.01 |
Consensus MFE | -14.50 |
Energy contribution | -14.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.81 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12716525 103 + 22224390 AUAUA------------UAAAGGAAUAUAAUAACAAAACACAUCCGCAGAGAAAAGCACCCCAAACAUUGACAUGUAUUAAAAUACCUUUUUGCAUGUCCUGUGACAGGCAGCAA .....------------....(((..................)))..........((.((....(((..((((((((..((......))..)))))))).)))....))..)).. ( -15.27) >DroSec_CAF1 68864 115 + 1 AUAUACAUAUAUGUUAAUAAAGGAGUAUAAAAACAAAACCCACUCGCAGAGAAAAGCACCCCAAACAUUGACAUGUAUUAAAAUACCUUUUUGCAUGUCCUGUGACAGGCAGCAG ......((((((((((((....((((...............))))((........)).........)))))))))))).............(((.((.((((...))))))))). ( -21.16) >DroSim_CAF1 53419 115 + 1 AUAUACAUAUAUGUUAAUAAAGGAGUAUGAAAACAAAACACAUUCGCAGAGAAAAGCACCCCAAACAUUGACAUGUAUUAAAAUACCUUUUUGCAUGUCCUGUGACAGGCAGCAA ......((((((((((((....((((.((.........)).))))((........)).........))))))))))))............((((.((.((((...)))))))))) ( -20.70) >DroYak_CAF1 72587 78 + 1 -------------------------------------ACACACUCGCAGAGAAAAGCACCCCAAACAUUGACAUGUAUUAAAAUACCUUUUUGCAUGUCCUGUGACAGGCAGCAA -------------------------------------.....(((...)))....((.((....(((..((((((((..((......))..)))))))).)))....))..)).. ( -14.90) >consensus AUAUA____________UAAAGGAGUAUAAAAACAAAACACACUCGCAGAGAAAAGCACCCCAAACAUUGACAUGUAUUAAAAUACCUUUUUGCAUGUCCUGUGACAGGCAGCAA .......................................................((.((....(((..((((((((..((......))..)))))))).)))....))..)).. (-14.50 = -14.50 + 0.00)
Location | 12,716,525 – 12,716,628 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.06 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -20.45 |
Energy contribution | -20.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -1.26 |
Structure conservation index | 0.88 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12716525 103 - 22224390 UUGCUGCCUGUCACAGGACAUGCAAAAAGGUAUUUUAAUACAUGUCAAUGUUUGGGGUGCUUUUCUCUGCGGAUGUGUUUUGUUAUUAUAUUCCUUUA------------UAUAU ..(((((.((((....)))).))).(((((((((((((.((((....)))))))))))))))))....))(((((((.........))))))).....------------..... ( -23.10) >DroSec_CAF1 68864 115 - 1 CUGCUGCCUGUCACAGGACAUGCAAAAAGGUAUUUUAAUACAUGUCAAUGUUUGGGGUGCUUUUCUCUGCGAGUGGGUUUUGUUUUUAUACUCCUUUAUUAACAUAUAUGUAUAU .((((((.((((....)))).))).(((((((((((((.((((....)))))))))))))))))....))).(((.((..((((..((........))..))))...)).))).. ( -23.70) >DroSim_CAF1 53419 115 - 1 UUGCUGCCUGUCACAGGACAUGCAAAAAGGUAUUUUAAUACAUGUCAAUGUUUGGGGUGCUUUUCUCUGCGAAUGUGUUUUGUUUUCAUACUCCUUUAUUAACAUAUAUGUAUAU ((((((((((...)))).)).))))(((((((((((((.((((....)))))))))))))))))...((((.(((((((.....................))))))).))))... ( -25.10) >DroYak_CAF1 72587 78 - 1 UUGCUGCCUGUCACAGGACAUGCAAAAAGGUAUUUUAAUACAUGUCAAUGUUUGGGGUGCUUUUCUCUGCGAGUGUGU------------------------------------- (((((((.((((....)))).))).(((((((((((((.((((....)))))))))))))))))....))))......------------------------------------- ( -21.30) >consensus UUGCUGCCUGUCACAGGACAUGCAAAAAGGUAUUUUAAUACAUGUCAAUGUUUGGGGUGCUUUUCUCUGCGAAUGUGUUUUGUUUUUAUACUCCUUUA____________UAUAU (((((((.((((....)))).))).(((((((((((((.((((....)))))))))))))))))....))))........................................... (-20.45 = -20.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:29 2006