Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,715,379 – 12,715,476 |
Length | 97 |
Max. P | 0.858917 |
Location | 12,715,379 – 12,715,476 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -14.79 |
Consensus MFE | -9.80 |
Energy contribution | -10.55 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.20 |
Mean z-score | -1.98 |
Structure conservation index | 0.66 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12715379 97 + 22224390 AAAACGACAAAAAAAAAAAAACACAUACUGCUUGUGAGCCA-ACAAUUUCACCAGUGGCAUACAAAGGGGAAAUCCCUCCGAAAACUUUCUAUAUAAA ....((.....................(..((.(((((...-.....))))).))..)........((((....)))).))................. ( -14.10) >DroSec_CAF1 67496 93 + 1 AAAACGAAAAAGA----AAAAAACCUACUGCUUGUGAGCCAAACAAUUUCACCAGUGGCAUACA-AGGGGAAAUCCCUCGGAAAACUUUCUAAAUAAA ..........(((----((....((.....((((((.((((..............)))).))))-))(((....)))..)).....)))))....... ( -18.64) >DroEre_CAF1 67486 83 + 1 AAAACGAAAAA------------G-UACUGUAUGUGAGCCA-ACAAUUUCAUCAGUAGUAUAAA-GGGGGAAAUCCCUCAGAAAAGUUUCUAAAUAAA .....((((..------------(-(((((...(((((...-.....)))))...))))))...-(((((....))))).......))))........ ( -16.40) >DroYak_CAF1 71993 84 + 1 AAAACGAAAAA------------UUUACUGCAUGUGAGCCA-AAAAUUUCACCAGUGGUAUAAA-AGUGGAAAUCCCUCAGAGAACUUUUUAAAUAAA ...........------------..(((..(..(((((...-.....)))))..)..))).(((-(((.((......)).....))))))........ ( -10.00) >consensus AAAACGAAAAA____________C_UACUGCAUGUGAGCCA_ACAAUUUCACCAGUGGCAUAAA_AGGGGAAAUCCCUCAGAAAACUUUCUAAAUAAA .....((((................(((((((.(((((.........))))).)))))))......((((....))))........))))........ ( -9.80 = -10.55 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:28 2006