Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,711,188 – 12,711,289 |
Length | 101 |
Max. P | 0.921432 |
Location | 12,711,188 – 12,711,289 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -16.66 |
Energy contribution | -16.86 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.14 |
Mean z-score | -2.09 |
Structure conservation index | 0.79 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12711188 101 + 22224390 AAAACGUUCAAGAGGUAAACAUGUUACACUUCUGAAUUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA .....(((((..((((((.....)))).))..))))).........(((((......((((((((.....)))))))).((((......)))))))))... ( -23.70) >DroSec_CAF1 63440 101 + 1 AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUAAAA .....((((.((((((...........)))))).))))........(((((......((((((((.....)))))))).((((......)))))))))... ( -21.50) >DroSim_CAF1 47411 101 + 1 AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA .....((((.((((((...........)))))).))))........(((((......((((((((.....)))))))).((((......)))))))))... ( -21.20) >DroEre_CAF1 63541 101 + 1 AAUACGUUCAAGAGGUAAAUUUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCGGCGCAGAGGCAAAUGCAA ......((((..((((((.....)))).))..)))).....((((............((((((((.....)))))))).(((........)))...)))). ( -25.20) >DroYak_CAF1 67717 101 + 1 AAUACGUGUAAGAGGUAAACAUGUUUCACUCCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUUCUCGACCGGAGCAGUGGCAAAUACAA .....((((....(((....((((((((....)))))))).................(((.((((.....)))).))).)))...((....))..)))).. ( -14.50) >consensus AAAACGUUUAAGAGGUAAACAUGUUACACUUCUGAAAUAUAUGCAAUAUUUAUCAAAGAGCAUUUCAAUUAAAUGCUCGGCCUGAGCGAAGGCAAAUACAA ......((((.(((((((.....)))).))).))))..........(((((......((((((((.....)))))))).((((......)))))))))... (-16.66 = -16.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:27 2006