Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,709,843 – 12,709,936 |
Length | 93 |
Max. P | 0.915124 |
Location | 12,709,843 – 12,709,936 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 86.74 |
Mean single sequence MFE | -19.49 |
Consensus MFE | -17.83 |
Energy contribution | -18.27 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.91 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12709843 93 - 22224390 GGCAGGGUAGUAAAAUAAAUAUUUCCAAAGCGAAAAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCGCAG ..(((((((.........((((((((((((((((..((...))..)))))(....)..))))))))))).........)))))))........ ( -23.47) >DroSec_CAF1 61924 93 - 1 AGCACGGUAGUAAAACAAAUAUUUCCAAAGUGAAGAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAGCAAACAAUAUCCUGAAUCGCAU ..((.((((.........((((((((((((((((((......)).)))))(....)..))))))))))).........)))).))........ ( -16.77) >DroEre_CAF1 62060 93 - 1 GGCAGGGUAGUAUAAUAAAUAUUUCAAAAGUGACAAGGGGUUUCAGUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCACAU ..(((((((.........(((((((.(((.(((((.(.((......)).).)).))).))).))))))).........)))))))........ ( -18.37) >DroYak_CAF1 66351 93 - 1 GCCAGGGUACUAUUAUAAAUAUUUCUAAAGUGACAAAGGGUUCACUUCGCGUGAUCAAUUUGGAAAUAUAACAAACACAAUCCUGAAUCACAC ..((((((..........(((((((((((.(((........((((.....))))))).)))))))))))..........))))))........ ( -19.35) >consensus GGCAGGGUAGUAAAAUAAAUAUUUCCAAAGUGAAAAAGGGUCUCAUUCGCGUGAUCAAUUUGGAAAUAUAACAAACAAUAUCCUGAAUCACAU ..(((((((.........((((((((((((((((...........)))))(....)..))))))))))).........)))))))........ (-17.83 = -18.27 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:26 2006