Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,705,376 – 12,705,472 |
Length | 96 |
Max. P | 0.826058 |
Location | 12,705,376 – 12,705,472 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 76.31 |
Mean single sequence MFE | -11.96 |
Consensus MFE | -9.32 |
Energy contribution | -8.88 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.37 |
Structure conservation index | 0.78 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12705376 96 - 22224390 CAAUGUAUAAA-AAAGAAUGAACAUAUUCAUUU---AACAACAACAGGCCAACUUGCCAAAUUUAAUGUGAAAAACAUGCGAAGGC-AGUGGAAAAUCCU-C ...........-...(((((((....)))))))---............(((...((((.......((((.....)))).....)))-).)))........-. ( -14.10) >DroSec_CAF1 58042 86 - 1 CAAUGUAUAAAAAAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA----------------UGCGAAAGCUUAUGGUAAAUCCUCC ...(((.........(((((((....)))))))..........)))...........((..----------------.((....))...))........... ( -10.61) >DroSim_CAF1 44544 83 - 1 CAAUGUAUAAA-AAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA----------------UGCGAAAGC-UAUGGAAAAUCCU-C ...(((.....-...(((((((....))))))).......)))..................----------------.((....))-...((.....)).-. ( -11.16) >consensus CAAUGUAUAAA_AAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA________________UGCGAAAGC_UAUGGAAAAUCCU_C ...(((.........(((((((....)))))))..........)))................................((....))....((.....))... ( -9.32 = -8.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:25 2006