Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,700,711 – 12,700,812 |
Length | 101 |
Max. P | 0.605414 |
Location | 12,700,711 – 12,700,812 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.48 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -10.82 |
Energy contribution | -11.72 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.08 |
Mean z-score | -2.96 |
Structure conservation index | 0.52 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12700711 101 + 22224390 GAUUACACAUAUUAGACGCUUUUUAGAAACGAGUUACACUUUUUUACCAAAAAGAGCAGUCCACUAAA-UACUAAAGUUUUUAAGUUUGCUGAUUAUGUGAU .....((((((((((.((...(((((((((.(((....(((((((....))))))).((....))...-.)))...)))))))))..)))))).)))))).. ( -18.50) >DroSec_CAF1 53475 93 + 1 CAUAACACAUAUUAGAAACUUUUCGGAAACGAGUUACACUUCUUUACA---------AGUGUAAUAAAUUACUAAAAUAUUUAAGUUUGCUGAUUGUGUAAU ....(((((.(((((((((((.(((....)))(((((((((......)---------)))))))).................)))))).))))))))))... ( -25.90) >DroSim_CAF1 39743 93 + 1 CAUAACACAUAUUAGAAACUUUUCAGAAACGAGUUACACUACUUUACA---------AGUGUACUAAAGUACUAAAAUAUUUAAGUUUGCUAAUUGUGUAAU ....(((((.(((((((((((..........(((.(((((........---------)))))))).(((((......))))))))))).))))))))))... ( -17.70) >consensus CAUAACACAUAUUAGAAACUUUUCAGAAACGAGUUACACUUCUUUACA_________AGUGUACUAAA_UACUAAAAUAUUUAAGUUUGCUGAUUGUGUAAU ....(((((.(((((((((((..........(((((((((.................)))))).......))).........)))))).))))))))))... (-10.82 = -11.72 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:21 2006