| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,698,101 – 12,698,209 |
| Length | 108 |
| Max. P | 0.805036 |
| Location | 12,698,101 – 12,698,209 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.10 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -18.78 |
| Energy contribution | -19.41 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12698101 108 - 22224390 AAUUGUUGCCCGACGAAGCACUAAAUUACAAAGUGCGUUUAUGCAAAUGUGCGUAUUACCGGG-AAUAAGUUAUAUUGAAAUAUUAA-AAAAAAAAUGGGACUGUUUCAA ..(((((.((((.....(((((.........)))))((.((((((....))))))..))))))-)))))......((((((((....-..............)))))))) ( -22.47) >DroSec_CAF1 50986 107 - 1 AAUUGUUGCCCGACGAAGCACUAAAUUACAAAGUGCGUUUAUGCAAACGUGGUUAUUACCGGG-AAUAAGUUAUGUUGAAAUAUUAA-AUAAA-GAUAAAAAUGUUUCGA ..(((((.(((.(((..(((((.........)))))((....))...)))(((....))))))-)))))......((((((((((..-.....-......)))))))))) ( -22.22) >DroSim_CAF1 36886 107 - 1 AAUUGUUGCCCGACGAAGCACUAAAUUACAAAGUGCGUUUAUGCAAACAUGGUUAUUACCGGG-AAUAAGUUAUGUUGAAAUAUUAA-AUAAA-GAAAAAAAUGUUUCAA ..(((((.(((......(((((.........)))))((((....))))..(((....))))))-)))))......((((((((((..-.....-......)))))))))) ( -20.92) >DroYak_CAF1 54543 109 - 1 AGUUAUUGCUCGACGAAGCACUAAAUUACAAAGUGCGUUUACGGAAACGUGGGCACUGCCUGGGAAAAAGUUAUAUUGAAAUAUGUUUAAAAA-AAAUGUAAUGUUUCAA ........((((.....(((((.........)))))(((((((....)))))))......))))...........(((((((((.........-.......))))))))) ( -23.69) >consensus AAUUGUUGCCCGACGAAGCACUAAAUUACAAAGUGCGUUUAUGCAAACGUGGGUAUUACCGGG_AAUAAGUUAUAUUGAAAUAUUAA_AAAAA_AAAAAAAAUGUUUCAA ..(((((.((((.....(((((.........)))))(((((((....))))))).....)))).)))))......((((((((((...............)))))))))) (-18.78 = -19.41 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:18 2006