Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,694,821 – 12,694,926 |
Length | 105 |
Max. P | 0.656512 |
Location | 12,694,821 – 12,694,926 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 75.25 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -12.36 |
Energy contribution | -14.45 |
Covariance contribution | 2.09 |
Combinations/Pair | 1.22 |
Mean z-score | -2.02 |
Structure conservation index | 0.43 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12694821 105 - 22224390 GAACCCUUUUGG-GGGCUUAGCAACAGUUGUGCUCCUCCAAC-GGGAUAAGUUCCUUCAAGUACUGUGCCUUACAUAAUUGAGG-GGAGCUCCUAAGGUUAC-CAAAUU .((((...((((-((((((............(((..(((...-.)))..))).(((((((....((((.....)))).))))))-)))))))))))))))..-...... ( -30.10) >DroSec_CAF1 47808 105 - 1 GAACCCUUUUGG-GGGCUUAGCAACAGUUGUGCUCCUCCAAU-GGGAUAAGUUCCUUCAAGUACUGGGUCUUACAUAAUUGAAG-GGAGCUCCUAAGGUAAC-CAAAAA ..(((...((((-((((((..(..((((((((.((((.....-))))((((..((..........))..))))))))))))..)-.)))))))))))))...-...... ( -30.00) >DroSim_CAF1 33899 106 - 1 NNNCCCUUUUGG-GGGCUUAGCAACAGUUGUGUCUCUCAAAC-GGGAUAAGUUCCUUCAAGUACUGGGUCUUACAUAAUUGAAG-AGAGCUUCUCUUGAGACACCAAUG ...(((.(((((-((((.((((....)))).))).)))))).-)))..................((((((((.((....))(((-((.....)))))))))).)))... ( -29.40) >DroEre_CAF1 47047 96 - 1 GAAUCCUUUUGG-GGGCUUAGCAACAGUUUUGCUCCUCCAAC-GGGAUAAGUUCCCUCAAGUACUGUGUCUUACAUAAUUGAAG-GGAGGUCCUA----------AAUU ..(((((.((((-(((...(((((.....)))))))))))).-)))))...(((((((((....((((.....)))).))).))-))))......----------.... ( -31.30) >DroYak_CAF1 51312 96 - 1 GAACCCUUUUGG-GGGCUUAGCAACAGUUUUGCUCCUCCAAC-GGGAUAAGUUCCCUCAAGUACUGUGUCUUACAUAAUUGAAG-GGAGCUCCUA----------AAUU ...(((..((((-(((...(((((.....)))))))))))).-)))...(((((((((((....((((.....)))).))).))-))))))....----------.... ( -32.80) >DroAna_CAF1 52629 88 - 1 GAACCCUUUUGGGGGGCUUAGCAACAGUUU-ACCCCUUUAAUGGGGGCAACUUCCUUCUCAUUUCGAGCCAUU--UAACUCAAAU------------------AUAAUG ...(((....))).(((((((....((((.-.((((......))))..)))).....))......)))))...--..........------------------...... ( -20.30) >consensus GAACCCUUUUGG_GGGCUUAGCAACAGUUGUGCUCCUCCAAC_GGGAUAAGUUCCUUCAAGUACUGUGUCUUACAUAAUUGAAG_GGAGCUCCUA________C_AAUU ...(((..((((.((((..(((....)))..)).)).))))..)))...(((((((((((....((.......))...)))))..)))))).................. (-12.36 = -14.45 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:17 2006