Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,693,645 – 12,693,737 |
Length | 92 |
Max. P | 0.533412 |
Location | 12,693,645 – 12,693,737 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 71.20 |
Mean single sequence MFE | -13.12 |
Consensus MFE | 0.00 |
Energy contribution | 0.00 |
Covariance contribution | 0.00 |
Combinations/Pair | nan |
Mean z-score | -1.49 |
Structure conservation index | -0.00 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12693645 92 - 22224390 UUGUUAAAUUGGUCCGUUUUGAAUUUCUGUACAACUAU-UAAAUGUUGCAUCUCAGCAUUUUCCCUUAAUGGUCCAUCCUGCAAGUGGCCAAC ((((.....(((.(((((..(((..((((..((((...-.....)))).....))).)..)))....))))).)))....))))......... ( -17.10) >DroSec_CAF1 46605 88 - 1 UUUUUAAAUUGGUCCGUUUCAAAUUACUGUAUAACUAU-UAAAUAUG----CUUUACAUUUUCCCUUAGUUGUCCAUCCUGCAAUUGACCCAC ..........((((.(((.((......((.(((((((.-.....(((----.....))).......))))))).))...)).))).))))... ( -10.92) >DroSim_CAF1 32704 87 - 1 UUGUUAAAUUGGUCCGUUUCAAAUUACUGUACAACUAU-UAAAUAU-----CUUUACAUUUUCCCUUAGUUGUCCAUCCUGCAAUUGACCCAC ..........((((.(((.((......((.(((((((.-.((((..-----......)))).....))))))).))...)).))).))))... ( -11.30) >DroEre_CAF1 45939 76 - 1 UGGUGAAAUUGGUCCGUUUCAAAUUUCUGUACAACUAUUUGAAUAUGGCAUCUUAAUAUUUUCCCAUAG---AAUAUUC-------------- (((..((((.((((((((((((((............))))))).)))).))).....))))..)))...---.......-------------- ( -13.10) >DroYak_CAF1 50179 84 - 1 ---UUAAAUUUGUA---GUUAAAUUUCUGUACAACCAUUUAAAUAUGGCAUCUUAAUAUUUUCCCAUUG---AAUGCCCUGCAAGUGACCCAC ---....(((((((---(((((((............))))))....(((((.(((((........))))---))))))))))))))....... ( -13.20) >consensus UUGUUAAAUUGGUCCGUUUCAAAUUUCUGUACAACUAU_UAAAUAUGGCAUCUUAACAUUUUCCCUUAGU_GUCCAUCCUGCAAGUGACCCAC ............................................................................................. ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:14 2006