Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,693,273 – 12,693,375 |
Length | 102 |
Max. P | 0.609169 |
Location | 12,693,273 – 12,693,375 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.12 |
Mean single sequence MFE | -15.49 |
Consensus MFE | -12.82 |
Energy contribution | -12.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.83 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12693273 102 + 22224390 AAACAAGUCAAUUUGCAUUCCGGCUUAAACGAACAUCGCCGGGUUAGUUAAUGUUGCAAAAAAGGUUAAAACAAAAAGAAAAAA----AAAAUUAAA--------UGAAAAGAA ...........((((((.((((((.............))))))...........))))))........................----.........--------......... ( -12.82) >DroSec_CAF1 46235 88 + 1 AAACAAGUCAAUUUGCAUUCCGGCUUAAACGAACAUCGCCGGGUUAGUUAAUGUUGCAAAAAAGGUUAA------AAAAAAGAA----G----------------AGUAAGGAA ...........(((((..((((((.............))))))....(((((.((......)).)))))------.........----.----------------.)))))... ( -14.02) >DroSim_CAF1 32328 94 + 1 AAACAAGUCAAUUUGCAUUCCGGCUUAAACGAACAUCGCCGGGUUAGUUAAUGUUGCAAAAAAGGUUAAAACAAAAAAAAAGAA----G----------------AGUAAAGAA ...........(((((...(((((.............)))))(((..(((((.((......)).))))))))............----.----------------.)))))... ( -14.42) >DroYak_CAF1 49785 114 + 1 AAGCAAGUCAAUUUGCAUUCCGGCUUAAACGAACAUCGCCGGGUUAGUUAAUGUUGCAAAAACCGUAAAAAAAAACAAAACGAAGCGAAAAAGUAUAAGAAUUACGACUGAGAA .....((((..(((((..((((((.............))))))...(((....((((.......)))).....)))........)))))...(((.......)))))))..... ( -20.72) >consensus AAACAAGUCAAUUUGCAUUCCGGCUUAAACGAACAUCGCCGGGUUAGUUAAUGUUGCAAAAAAGGUUAAAACAAAAAAAAAGAA____A________________AGUAAAGAA ...........((((((.((((((.............))))))...........))))))...................................................... (-12.82 = -12.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:13 2006