Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,416,095 – 1,416,210 |
Length | 115 |
Max. P | 0.916445 |
Location | 1,416,095 – 1,416,210 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -29.28 |
Consensus MFE | -7.80 |
Energy contribution | -8.68 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -1.98 |
Structure conservation index | 0.27 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1416095 115 - 22224390 CCCUCACAUUCCAUCGCGAGCAUUUGGCUGACAGCAUAACUAAUCGCGACUGUAACAG-CUGCUUAGAGCUGACACCUUGUAUGUGGCAUACAGUUCUUAAUGGAAAAUUAA---AACU ........(((((((((((.......((.....))........)))))((((((.(((-((......))))).(((.......)))...)))))).....))))))......---.... ( -28.56) >DroSec_CAF1 22562 111 - 1 CCACCA-AUUCCAUCGCGAGCAUUUGGCUGACAGCAUGACUAUUCGCGAAUGUAACAG-CUACUUAAAGCUGGCACCUUGUAUGAGGCAUAAAGACA----U--ACAAUUAAUGGAACU ......-.((((((((((((......((.....)).......)))))))..((..(((-((......)))))..)).(((((((...........))----)--))))....))))).. ( -27.32) >DroSim_CAF1 13183 115 - 1 CCACCA-AUUCCAUCGCGAGCAUUUGGUUGACAGCAUGACUAUUCGCGAAUGUAACAG-CUACUUAAAGCUGGCACCUUGUAUGAGGCAUACAGACAUACAU--ACAAUUAAUGGAACU ......-.((((((((((((....(((((........))))))))))))(((((.(((-((......))))).....(((((((...)))))))...)))))--........))))).. ( -30.00) >DroEre_CAF1 17888 105 - 1 CCACGC-AUUGCACCGCGAGCUUCUGGCUGAUAGCUUAACUAUUCGCCAAUGUAAGAU-GUGAUCAAAGCUCGCACCUUGUAUGUGGCAUACA-UUC-----------UCUAUGGAACU (((...-........((((((((.((((.(((((.....))))).))))......(((-...))).))))))))....((((((...))))))-...-----------....))).... ( -28.20) >DroYak_CAF1 14082 104 - 1 ---CAC-AACUCAACGCGAGCUUCUGGCUGACAGCGUAACUAUUCGCCCAUGUUAACUCUUGCUCAAAGCUCGCAAGUUGUAUGUGGAAAAUAGUUC-----------UUUAUGGAACU ---(((-(...((((((((((((..(((((((((((........)))...)))))......)))..))))))))..))))..))))......(((((-----------(....)))))) ( -32.30) >consensus CCACCA_AUUCCAUCGCGAGCAUUUGGCUGACAGCAUAACUAUUCGCGAAUGUAACAG_CUGCUUAAAGCUGGCACCUUGUAUGUGGCAUACAGUUC____U__A_AAUUAAUGGAACU .............(((((((......((.....)).......)))))))...................(((.((.....))....)))............................... ( -7.80 = -8.68 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:47 2006