Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,692,330 – 12,692,444 |
Length | 114 |
Max. P | 0.828579 |
Location | 12,692,330 – 12,692,444 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -19.30 |
Energy contribution | -19.94 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.88 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12692330 114 - 22224390 UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCC--ACUCCUGAGCCC ...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))....--......)))).. ( -23.70) >DroSec_CAF1 45383 116 - 1 UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCGCACUCCUGAGCCC ...((((((.....))))))..((((...........((((...))))......(((((..((((((....)))).........(((........))))).)))))....)))).. ( -24.30) >DroSim_CAF1 31414 116 - 1 UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCACACUCCUGAGUCC ...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))............)))).. ( -21.60) >DroEre_CAF1 44571 114 - 1 UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUCCUUAUUCCAUUCUCGAUUUCGAACC--CCACUCCUGAUCCC ...((((((.....)))))).............((((((((((((.....))))))(((.(.....).)))....))))))......(((....)))...--.............. ( -20.30) >DroYak_CAF1 48893 115 - 1 UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCCAUGUCGCCAUCCUUAUUCCAAUCUCAAUUUCAAACC-CCCAUUCCUGAUCCC .(((((((((....((......)).........((((((((((((.....))))))(((.(.....).)))....))))))..)))))))))........-............... ( -19.20) >consensus UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCCCACUCCUGAGCCC ...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))............)))).. (-19.30 = -19.94 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:12 2006