Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,691,747 – 12,691,852 |
Length | 105 |
Max. P | 0.551314 |
Location | 12,691,747 – 12,691,852 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -15.68 |
Energy contribution | -17.23 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.69 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12691747 105 + 22224390 AUAAAUGUACC------CAAUGGUAACUCGAUCGAAAGCGAUGCCAAGAUUACUGGCCUAAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUUAAUUAUG--AUUAAGUGAU------- .......((((------....)))).....((((....))))((((.......)))).(((((((((.......)))))))))((((((((((.....)))--))..))))).------- ( -19.20) >DroSec_CAF1 44771 113 + 1 AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAAGCAAUGCCAACAGCACUGGCCUUAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUAAC------- .....(((.((((.((..((((((((...............(((.....))).((((...(((((((.......))))))).))))))))))))..)).)))).)))......------- ( -22.50) >DroSim_CAF1 30825 120 + 1 AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAUGCAAUGCCAAGAGAACUGGCCUAAAUUCAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUACCAAAAUUA .....(((.((((.((..((((((((...((.(((((((...((((.......))))....((((.......))))))))))))).))))))))..)).)))).)))............. ( -26.10) >consensus AUAAAUGAACCCUAACCCUAUGGUAACUCGAUCGAAAGCAAUGCCAAGAGAACUGGCCUAAAUACAUAUAUCGAAUGUAUUUGUCAUUAUCAUAAUGUAGGGGCUUAACUAAC_______ .........(((((....((((((((................((((.......)))).(((((((((.......)))))))))...))))))))...))))).................. (-15.68 = -17.23 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:11 2006