Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,691,150 – 12,691,258 |
Length | 108 |
Max. P | 0.706389 |
Location | 12,691,150 – 12,691,258 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.96 |
Mean single sequence MFE | -37.29 |
Consensus MFE | -18.00 |
Energy contribution | -18.04 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.54 |
Mean z-score | -1.72 |
Structure conservation index | 0.48 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12691150 108 + 22224390 ACUUUGUUAGCGGCACGAU------------CCUUCUCUGUGGCACCCGGACUUGCCUCCUUUAUGGGCUUUUGCAGCUGAAAAUUGGUGCUGCAAAAGCUAUUGGUGGCUUUCAACAGC ...(((((.((.(((.((.------------.....))))).))....(((...(((.((......((((((((((((...........))))))))))))...)).))).)))))))). ( -36.80) >DroSec_CAF1 44180 104 + 1 ----UGCUAGCGGCAGGAU------------CCUCCUCUGGGUCAGGCGGUAUUGCCUCCUUUAUUGGUUUUUGCAGCCGGAAAUCUGCGCUGCAAAAGCUAUCGGUGGCUUUCAAUAGC ----.((((((.((..(((------------((......)))))..)).))...(((.((.....((((((((((((((((....))).)))))))))))))..)).)))......)))) ( -45.80) >DroSim_CAF1 30229 104 + 1 ----UGCUAGCGGCAGGAU------------CCUUCUCUGGGUCAGCCGGAAUUGCCUCUUUUAUUGGUUUUUGCAGCCGGAAAUCGGCGCUGCAAAAGCUAUCGUUGGCUUUCAAUAGC ----.((((.((((..(((------------((......))))).))))(((..(((........((((((((((((((.(....).).))))))))))))).....))).)))..)))) ( -42.52) >DroEre_CAF1 43452 114 + 1 AGAUUGUCCGCGGAAUGAUCCCGAU------CCUCCUCUGGGGCAGCCGGACUCGAAGCAUUUAUUGGUAUUUGCAAGCGGUUUUUGGUGCUGCAGCAGCAACUGAUGGAUUUCAUCACC .(((.(((((.(...((.((((((.------.....)).)))))).))))))..(((..((((((..((..((((..(((((.......))))).))))..))..))))))))))))... ( -31.30) >DroYak_CAF1 47753 120 + 1 AGAUUGUCGGUGGUAUGAUCCCCAUUCACUUCCUUUUUUGGAGCAACCGGACUUGCCACCUUGAUGGGUUUUUGCAAACGGGAAUUGGCGUUGCUGUAACUACUGGUGGGUUUCAUCAGC ........(((((((.(.(((........((((......)))).....)))).)))))))......((((...((((.((........))))))...)))).((((((.....)))))). ( -30.02) >consensus A__UUGUUAGCGGCAGGAU____________CCUUCUCUGGGGCAGCCGGACUUGCCUCCUUUAUUGGUUUUUGCAGCCGGAAAUUGGCGCUGCAAAAGCUAUUGGUGGCUUUCAACAGC .....((((.(((.......................(((((.....)))))...............(((((((((((((.(....).).)))))))))))).))).)))).......... (-18.00 = -18.04 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:10 2006