Locus 4876

Sequence ID X_DroMel_CAF1
Location 12,682,645 – 12,682,742
Length 97
Max. P 0.539599
window7961

overview

Window 1

Location 12,682,645 – 12,682,742
Length 97
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 88.39
Mean single sequence MFE -25.52
Consensus MFE -19.64
Energy contribution -20.64
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value 0.01
SVM RNA-class probability 0.539599
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12682645 97 - 22224390
--------GGCAAGAAUGUUUUGUGGCAUUCGAAA-AAAGCAUGGAAGCAUGGCUCAAUUGUUGUUCGCCUCUCUUGGUUUUUUUCUUUUUUUUUGAGCUGCAAAG
--------(((..(((((((....)))))))((((-(((((..(((.(((..((......))..)..)).)))....)))))))))...........)))...... ( -23.60)
>DroSec_CAF1 35918 93 - 1
GAAUGGCGGGCAAGAAUGUUUUGUGGCAUUCGAAA-AAAGCAUGGAAAC-UGGCUCAAUUGUUGUUCGCCUCUCUUGGUUU-----------UUUAAGCUGCUAAG
....((((((((((((((((....)))))))....-..(((..(....)-..)))......)))))))))...((((((..-----------........)))))) ( -27.20)
>DroSim_CAF1 18287 94 - 1
AAAUGGCGGGCAAGAAUGUUUUGUGGCAUUCGAAAAAAAGCAUGGAAAC-UGGCUCAAUUGUUGUUCGCCUCUCUUGGUCU-----------UUUAAGCUGCCAAG
....((((((((((((((((....))))))).......(((..(....)-..)))......)))))))))...((((((..-----------........)))))) ( -28.70)
>DroEre_CAF1 35139 93 - 1
AAAAGGCGGGCAAGAAUGUUUUGUGGCAUUCGAAA-AAAGCAUGGAAAC-UGGCUCAAUUGUUGUUCGCCUCUCUUGGUUU-----------UUUAAGCUGCAAAG
...(((((((((((((((((....)))))))....-..(((..(....)-..)))......))))))))))..(((((...-----------.)))))........ ( -25.50)
>DroYak_CAF1 39187 93 - 1
AAAAGGCGGGCAAGAAUGUUUUGUGGCAUUCGAAA-AAAGCAUGGAAAC-UGGCUCAAUUGUUGUUAGCCUCUCUUGGUUU-----------UUUAAGCUGCAAAG
.....((((.(..(((((((....)))))))..((-(((((..(((...-.((((.(((....)))))))..)))..))))-----------)))..))))).... ( -22.60)
>consensus
AAAAGGCGGGCAAGAAUGUUUUGUGGCAUUCGAAA_AAAGCAUGGAAAC_UGGCUCAAUUGUUGUUCGCCUCUCUUGGUUU___________UUUAAGCUGCAAAG
....((((((((((((((((....))))))).......(((..(....)...)))......))))))))).................................... (-19.64 = -20.64 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:09 2006