Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,678,063 – 12,678,165 |
Length | 102 |
Max. P | 0.596155 |
Location | 12,678,063 – 12,678,165 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -6.15 |
Energy contribution | -7.80 |
Covariance contribution | 1.65 |
Combinations/Pair | 1.16 |
Mean z-score | -1.69 |
Structure conservation index | 0.26 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12678063 102 + 22224390 ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCGAGAAAAUAAUCGCAGGCGAA----CUGGCUGUACGUCUAAGCGUAUUAA-GCAUUAUGCUAUAUGGC ....-.......((((.....-.((((.(((((((....((((........)))).))))))----)..(((((((((....))))))..)-))...))))....)))) ( -27.20) >DroSim_CAF1 14464 104 + 1 ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGCAGGCGAACUAACUGGCUGGAUGUCUAAGCGUAUAAA-GCAUUAUGCUAUAUGGC .(((-.((((((((.......-.))...(((((((....(((--(......)))).))))))).....))..)))).....((((((....-....))))))...))). ( -26.90) >DroEre_CAF1 30677 87 + 1 ACCA-AAUCCCCGCUAAAAAAGUGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGG------------------UACGUAUAAACGUAUAAA-GCAUUAUGGUUUAUAGC (((.-.....(((((((...((((.......)))).))))))--)..((((((.(------------------(((((....))))))...-).))))))))....... ( -20.20) >DroYak_CAF1 34728 101 + 1 ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGGAGGCGAA----CUGGCUGUGCGUAUAAACGUAUAAGGGCAUUAUGGUAUAUGGC ((((-(((.(((.........-.((...(((((((.....(.--((.....)).).))))))----)..))(((((((....))))))).))).))).))))....... ( -27.90) >DroAna_CAF1 38309 81 + 1 ACCAAAAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAACGGAGGCCAG----AGAGCUCAACG---------------------AGGUAGAUGGC .......((((((((((....-.((.......))..))))))--)........))).((((.----..(.(((...)---------------------)).)...)))) ( -17.70) >consensus ACCA_AAUCCCCGCUAAAAAA_UGCAUUGUUCGCUAUUAGCG__GAAAUAAUCGGAGGCGAA____CUGGCUGUACGUAUAAACGUAUAAA_GCAUUAUGGUAUAUGGC .(((....((.((((((......((.......))..))))))..............................((((((....))))))...........))....))). ( -6.15 = -7.80 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:06 2006