Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,669,240 – 12,669,352 |
Length | 112 |
Max. P | 0.628402 |
Location | 12,669,240 – 12,669,352 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.04 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -12.62 |
Energy contribution | -12.66 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.11 |
Structure conservation index | 0.54 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12669240 112 + 22224390 GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA-CCCAUACCCAUACACUUGGGUGAGAGCCAACU ............((((.((((...)))).))))..((((((((..(......)..))))))))........((.(((.((-((((............)))))).))))).... ( -29.40) >DroSec_CAF1 23087 112 + 1 GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA-CCCAUAUCCAUACACUUGGGUGAGAGCCAACU ............((((.((((...)))).))))..((((((((..(......)..))))))))........((.(((.((-((((............)))))).))))).... ( -29.40) >DroEre_CAF1 22235 96 + 1 GAACUUUUCAAAAGAUUCAACUUUGCUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAAGUCUCACA-CCCAUACCUAUACA----------------AC (((((((.....((((.((.......)).))))..((((((((..(......)..))))))))......))))).))...-..............----------------.. ( -12.90) >DroYak_CAF1 26182 113 + 1 GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACAACACAUACCUAUACACUUGGGUGAGAGGCAACC ....(((((..........((((((((.....((.((((((((..(......)..)))))))).))))))))))...........((((((......)))))).))))).... ( -27.20) >DroAna_CAF1 27548 91 + 1 AAACGCCUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGAGCAAUUUGAUUAGGGCUCAUAAACAAACAAGGGUACACU-GCCACAU---UACA------------------ ....((((....((((.((((...)))).))))..((((((((..(......)..))))))))........)))).....-.......---....------------------ ( -17.70) >consensus GAACGCUUCAAAAGAUUCAACUUUGUUGCAUCUAAUUAUGGGCAAUUUGAUUAGGGCUCAUAAAUAAACAAGGUCUCACA_CCCAUACCCAUACACUUGGGUGAGAG_CAACC ............((((.((((...)))).))))..((((((((..(......)..)))))))).................................................. (-12.62 = -12.66 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:01 2006