Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,665,815 – 12,665,913 |
Length | 98 |
Max. P | 0.701137 |
Location | 12,665,815 – 12,665,913 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -14.03 |
Energy contribution | -14.66 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.71 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12665815 98 + 22224390 UUUUUGUAA--------CGUAUUUUUUACGAGGCUGGCGCCGUUUUUAUGACCAUUGCUUCCCUUUGUUACUUGCAAUUUGUUUUUUGAUGUUUAUGCCACGCCAG .........--------((((.....)))).((((((((.((((.....(((.(((((...............)))))..)))....))))....))))).))).. ( -20.36) >DroSec_CAF1 19442 98 + 1 UUUUUGUAA--------CGUAUUUUUUACGAGGCUGGCGCCGUUUUUAUGACCAUUGCUUCCCUUUGUUACUUGCAAUUUGUUUUUUGAUGUUUAUGCCACGCCAG .........--------((((.....)))).((((((((.((((.....(((.(((((...............)))))..)))....))))....))))).))).. ( -20.36) >DroEre_CAF1 19675 93 + 1 ---UUUU-A--------CGUA-UUUUUACGAGGCUGGCGCCGUUUUUAUGACCAUUGCUUCCCUUUGUUACUUGCAAUUUGCUUUUUGAUGUUUAUGCCACGCCAG ---....-.--------((((-....)))).((((((((.((((.....(...(((((...............)))))...).....))))....))))).))).. ( -19.36) >DroAna_CAF1 24779 99 + 1 UUUUCGUAGUAGUAUUUUGUA-UUUUUACGAGGAUGGCGCC-UUUUUAUGACCGUUUCU----UUUGUUACUUGCAAUUUGUU-UUUGAUGUUUAUGCCACGCCAG (((((((((.(((((...)))-)).)))))))))(((((..-....(((((.((((.(.----.((((.....))))...)..-...)))).)))))...))))). ( -18.60) >consensus UUUUUGUAA________CGUA_UUUUUACGAGGCUGGCGCCGUUUUUAUGACCAUUGCUUCCCUUUGUUACUUGCAAUUUGUUUUUUGAUGUUUAUGCCACGCCAG .................((((.....)))).((((((((.((((.....(((.(((((...............)))))..)))....))))....))))).))).. (-14.03 = -14.66 + 0.63)
Location | 12,665,815 – 12,665,913 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -16.45 |
Consensus MFE | -12.44 |
Energy contribution | -13.19 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.76 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12665815 98 - 22224390 CUGGCGUGGCAUAAACAUCAAAAAACAAAUUGCAAGUAACAAAGGGAAGCAAUGGUCAUAAAAACGGCGCCAGCCUCGUAAAAAAUACG--------UUACAAAAA ..(((.((((..................(((((...............))))).(((........)))))))))).((((.....))))--------......... ( -17.86) >DroSec_CAF1 19442 98 - 1 CUGGCGUGGCAUAAACAUCAAAAAACAAAUUGCAAGUAACAAAGGGAAGCAAUGGUCAUAAAAACGGCGCCAGCCUCGUAAAAAAUACG--------UUACAAAAA ..(((.((((..................(((((...............))))).(((........)))))))))).((((.....))))--------......... ( -17.86) >DroEre_CAF1 19675 93 - 1 CUGGCGUGGCAUAAACAUCAAAAAGCAAAUUGCAAGUAACAAAGGGAAGCAAUGGUCAUAAAAACGGCGCCAGCCUCGUAAAAA-UACG--------U-AAAA--- ..(((.((((..................(((((...............))))).(((........)))))))))).((((....-))))--------.-....--- ( -17.86) >DroAna_CAF1 24779 99 - 1 CUGGCGUGGCAUAAACAUCAAA-AACAAAUUGCAAGUAACAAA----AGAAACGGUCAUAAAAA-GGCGCCAUCCUCGUAAAAA-UACAAAAUACUACUACGAAAA .((((((.(((...........-.......)))..........----.((.....)).......-.))))))...(((((....-.............)))))... ( -12.20) >consensus CUGGCGUGGCAUAAACAUCAAAAAACAAAUUGCAAGUAACAAAGGGAAGCAAUGGUCAUAAAAACGGCGCCAGCCUCGUAAAAA_UACG________UUACAAAAA ..(((.((((..................(((((...............))))).(((........))))))))))..(((.....))).................. (-12.44 = -13.19 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:00 2006