Locus 4868

Sequence ID X_DroMel_CAF1
Location 12,663,906 – 12,664,019
Length 113
Max. P 0.567727
window7947

overview

Window 7

Location 12,663,906 – 12,664,019
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 76.83
Mean single sequence MFE -38.97
Consensus MFE -20.11
Energy contribution -20.14
Covariance contribution 0.03
Combinations/Pair 1.26
Mean z-score -1.76
Structure conservation index 0.52
SVM decision value 0.07
SVM RNA-class probability 0.567727
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12663906 113 - 22224390
AAUUCGAUAGCUAAUCGUGCCACCAUUAUUUUGAGUAAAUCAUGCAGCAAUGUGGAUGGUGAUGCCACUGCCACAGCGGCAACGGCACUAAGUUCAACGGUUGGCGGCGGCAU
...(((...(((((((((..(((((((....(((.....))).(((....))).))))))).((((..((((.....))))..)))).........)))))))))..)))... ( -38.20)
>DroPse_CAF1 25616 101 - 1
AACUCGAUCGCCAAUCGAGCCACCAUCAUUCUGAGUAAGUCCUGCAGCAAUGUGGACGGCGGUGGCACCGGCAU---GGGCAUGGGC--------AUCGGU-GUCGGUGUGGG
...(((((.....)))))((((((.((.....))....((((.(((....)))))))...)))))).((.((((---.(((((.(..--------..).))-))).)))).)) ( -41.00)
>DroSec_CAF1 17531 106 - 1
AAUUCGAUAGCUAAUCGUGCCACCAUUAUCCUCAGCAAAUCCUGCAGCAAUGUGGAUGGUGAUGCCGCUGCCACAGCGGCAACCGCACUAAGUUCAACGGUUGGCG-------
.........(((((((((((...((((((((.(((((.....))).....)).)))))))).((((((((...))))))))...))))...(.....)))))))).------- ( -38.70)
>DroEre_CAF1 17723 113 - 1
AACUCGAUAGCCAAUCGUGCCACCAUUAUUCUGAGCAAAUCCUGCAGCAAUGUGGAUGGUGAUGCCACUGCCACAACGGCAACCGCGCUGAGCUCAACGGUUGGCGGUGGCAU
..(.((((.....)))).).((((((......((.....))(..((....))..)))))))(((((((((((....((((......))))((((....))))))))))))))) ( -39.50)
>DroYak_CAF1 20611 113 - 1
AAUUCGAUAGCAAAUCGUGCCACCAUUAUUCUCAGCAAAUCCUGUAGCAAUGUGGAUGGUGAUGCCACUGCCACAGCGGGCACGGCACUAAGUUCAACGGUUGGCGGUGGAAU
.((((.((.((.((((((((((((((.((((((((......))).)).))))))).))))..((((..((((......)))).)))).........)))))).)).)).)))) ( -34.50)
>DroPer_CAF1 30142 101 - 1
AACUCGAUCGCCAAUCGAGCCACCAUCAUUCUGAGUAAGUCCUGCAGCAAUGUGGACGGCGGUGGCACCGGCAU---GGGCAUGGGC--------AUCGGU-GUCGGUGUUGG
...(((((.....)))))((((((.((.....))....((((.(((....)))))))...)))))).(((((((---.(((((.(..--------..).))-))).))))))) ( -41.90)
>consensus
AACUCGAUAGCCAAUCGUGCCACCAUUAUUCUGAGCAAAUCCUGCAGCAAUGUGGAUGGUGAUGCCACUGCCACAGCGGCAACGGCACUAAGUUCAACGGUUGGCGGUGGCAU
....((((.....)))).(((((((.((((((..(((.....))))).))))))).))))....(((((((((...((...................))..)))))))))... (-20.11 = -20.14 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:52 2006