Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,660,699 – 12,660,791 |
Length | 92 |
Max. P | 0.944076 |
Location | 12,660,699 – 12,660,791 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -24.98 |
Energy contribution | -24.85 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.11 |
Mean z-score | -2.31 |
Structure conservation index | 0.84 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12660699 92 - 22224390 -CUGUAGAUGGGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAUUUCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGUUUGGCGA---ACUGCA -..((((...(((((((((((.((.(((.....))).)).....((((.((....)).))))))).)))))))).(((....)))..---.)))). ( -28.80) >DroSec_CAF1 14397 94 - 1 -CUGCAGAUGAGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAU-UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGAUGGACUGCA -..((((.(((.((((((((..((.(((.....))).))...((-(((.((....)).))))))).)))))))))(((....)))......)))). ( -29.00) >DroEre_CAF1 14613 91 - 1 -CUGUAGAUGGGCGGGAUUCAGGAGUUGGAAAUCAAAUCAAAUU-UCGUCCAAAUGGGCGAAUGAUGUCCUGUCCGUUGAUGGACGA---ACUGCA -((((.(((((((((((((((.((.(((.....))).))....(-((((((....)))))))))).)))))))))))).))))....---...... ( -32.40) >DroYak_CAF1 17380 92 - 1 CCUGUUGAUGGGCGGGAUUCAGGAGUUGGAAAUCAAAUCAAAAU-UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGA---ACUGCA .((((..((.((((((((((..((.(((.....))).))...((-(((.((....)).))))))).)))))))).))..))))....---...... ( -28.60) >consensus _CUGUAGAUGGGCGGGACUCAGGAGUUGGAAAUCAAAUCAAAAU_UCGGCCAAAUGGGCGAAUGAUGUCCUGUCAGUUGAUGGACGA___ACUGCA ...((((...(((((((((((.((.(((.....))).))......(((.((....)).))).))).)))))))).(((....)))......)))). (-24.98 = -24.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006