Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,659,620 – 12,659,712 |
Length | 92 |
Max. P | 0.500000 |
Location | 12,659,620 – 12,659,712 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -16.77 |
Consensus MFE | -13.26 |
Energy contribution | -13.07 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.25 |
Mean z-score | -1.36 |
Structure conservation index | 0.79 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12659620 92 - 22224390 GAGCAAUAUACAUGCUUCAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGUACAAUUUGAUUUGAGCUU--UCCCCUGAUUAGAUCCAA (((((.......))))).((((((((((((((........((((((.....))))))))).)))))))).))).--.................. ( -17.50) >DroSec_CAF1 13359 88 - 1 G----AUAUACAUGCUACAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUU--UCCCCUGAGUAGAUCCAA .----.........((((((((((((((((((........((((((.....))))))))).)))))))).))).--((....))))))...... ( -21.00) >DroEre_CAF1 13581 88 - 1 G----AUGUACAUAUAUCAGCCAAAUCAAUUGACUUUAAAUACCAUCAAUCAUGGCACAAUUUGAUUUGAGCUU--UCCCCUGAUUAGAUCCAA (----((((....)))))((((((((((((((..........((((.....))))..))).)))))))).))).--.................. ( -13.40) >DroYak_CAF1 16221 90 - 1 G----AUAUACAUAUCUAAGUGAAGUAGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUCUCUCCCCUGAUUAGAUCCAA .----........((((((....((..((..((.((((((((((((.....))))))........)))))).))..))..))..)))))).... ( -15.20) >consensus G____AUAUACAUACUUCAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUU__UCCCCUGAUUAGAUCCAA ..................((((((((((((((........((((((.....))))))))).)))))))).)))..................... (-13.26 = -13.07 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006