Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,653,309 – 12,653,428 |
Length | 119 |
Max. P | 0.542991 |
Location | 12,653,309 – 12,653,428 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 95.38 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -29.50 |
Energy contribution | -30.50 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.85 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12653309 119 + 22224390 GUAGAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGUCACUAGAUGGGGUCGCUUCAUAUUAAACAAGGCGCUCGCU ...((((.((((((((((((((((.(((..(((....))).....(((((..(((.((((....)))).)))..))))).))).))).)))))))))........))))...))))... ( -31.80) >DroSec_CAF1 6909 116 + 1 G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCUCGCU .--((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-)))))))........))))...))))... ( -37.90) >DroSim_CAF1 9007 116 + 1 G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCUCGCU .--((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-)))))))........))))...))))... ( -37.90) >DroEre_CAF1 7125 112 + 1 G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGUCACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCU---- .--..((.((((((((((((((((.(((..(((....))).....(((((..(((.((((....)))).)))..))))).))).)))))-)))))))........)))).))...---- ( -32.30) >DroYak_CAF1 9760 112 + 1 G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUGGAUGG-UUCGCUUCACAUUAAACAAGGCGCU---- .--..((.((((((((((.(((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-.))))))........)))).))...---- ( -33.30) >consensus G__GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG_GUCGCUUCACAUUAAACAAGGCGCUCGCU ...((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).))))).)))))))........))))...))))... (-29.50 = -30.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:49 2006