Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,644,914 – 12,645,087 |
Length | 173 |
Max. P | 0.790619 |
Location | 12,644,914 – 12,645,018 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -17.95 |
Energy contribution | -18.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.69 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12644914 104 - 22224390 GAACAUAUUU-UUUGUAACCUACAUUUUUGGCAAAUGAAAGUUGCCGGGUGUUGUUGCAUCUUUUGCCAGCGAGCUCCUUUCAUUUCACUUUCCCAGAAAUAGU---------------A ..........-.........(((((((((((.(((((((((..((....(((((..(((.....)))))))).))..))))))))).......)))))))).))---------------) ( -22.10) >DroSim_CAF1 689 118 - 1 GAACAUAUUUUUUUGUAACCUACAUUUUUGGCAAAUGAAAGUUGCCGGGUGUUGUUGCAUCUCUUG-CAGCGAGCUCCUUUCAUUUUACUUACCCAGAAAUACAUACCCUAUUAC-CAGU ..(((........))).......((((((((.(((((((((.....((((.((((((((.....))-))))))))))))))))))).......))))))))..............-.... ( -24.10) >DroYak_CAF1 866 118 - 1 GAACAUAUUU-UUCGUAACCUACAUUUUUGGCAAAUGAAAGUUGCCGGGUGUUGUUGCAUCUUUUG-CAGCGCGCUCCUUUCAUUUUACUUGCCCCAAAAUGCAUACCCUAUUAUGCAUU ..........-..................((((((((((((.....((((((.((((((.....))-))))))))))))))))).....)))))....((((((((......)))))))) ( -31.40) >consensus GAACAUAUUU_UUUGUAACCUACAUUUUUGGCAAAUGAAAGUUGCCGGGUGUUGUUGCAUCUUUUG_CAGCGAGCUCCUUUCAUUUUACUUACCCAGAAAUACAUACCCUAUUA__CA_U .......................((((((((.(((((((((..(((((((((....))))).........)).))..))))))))).......))))))))................... (-17.95 = -18.07 + 0.11)
Location | 12,644,979 – 12,645,087 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -25.15 |
Energy contribution | -24.93 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.64 |
Structure conservation index | 0.76 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12644979 108 + 22224390 UUUCAUUUGCCAAAAAUGUAGGUUACAAA-AAAUAUGUUCCGCUGGCACUUGAGC---AGCCAAGUGGGUCGCUGUUCUAAGUGCUCAGUUGG--------GUUGUUUCAUUUUUUUUUU ...(((((.....)))))........(((-(((.(((.(((((((((((((((((---(((..........))))))).)))))).))).)))--------)......))).)))))).. ( -28.70) >DroSim_CAF1 767 106 + 1 UUUCAUUUGCCAAAAAUGUAGGUUACAAAAAAAUAUGUUCCGCUGGCACUUGAGC---AGCCAAGUGGGUCGCUGUUCUAAGUGCUCAGUUGG--------GUUUUU---UUUUGUUUUU ...(((((.....)))))......(((((((((...(..(.((((((((((((((---(((..........))))))).)))))).)))).).--------.).)))---)))))).... ( -33.00) >DroYak_CAF1 945 116 + 1 UUUCAUUUGCCAAAAAUGUAGGUUACGAA-AAAUAUGUUCCGCUGGCACUUGAGCAGCAGCCAAGUGGGUCGCUGUUCUAAGUGCUCAGUUGGGAAGGAGGGUUCUU---UCUUUUUUUU ((((....(((.........)))...)))-)........(((((((((((((((((((.(((.....))).))))))).)))))).))).)))(((((((((.....---))))))))). ( -38.10) >consensus UUUCAUUUGCCAAAAAUGUAGGUUACAAA_AAAUAUGUUCCGCUGGCACUUGAGC___AGCCAAGUGGGUCGCUGUUCUAAGUGCUCAGUUGG________GUUCUU___UUUUUUUUUU .((((..(((((.....((.((..(((........))).)))))))))..))))......((((.((((.((((......)))))))).))))........................... (-25.15 = -24.93 + -0.22)
Location | 12,644,979 – 12,645,087 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -16.77 |
Energy contribution | -17.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.82 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12644979 108 - 22224390 AAAAAAAAAAUGAAACAAC--------CCAACUGAGCACUUAGAACAGCGACCCACUUGGCU---GCUCAAGUGCCAGCGGAACAUAUUU-UUUGUAACCUACAUUUUUGGCAAAUGAAA .....(((((((.......--------((..(((.((((((.((.((((.(......).)))---).))))))))))).)).(((.....-..)))......)))))))........... ( -24.10) >DroSim_CAF1 767 106 - 1 AAAAACAAAA---AAAAAC--------CCAACUGAGCACUUAGAACAGCGACCCACUUGGCU---GCUCAAGUGCCAGCGGAACAUAUUUUUUUGUAACCUACAUUUUUGGCAAAUGAAA ....((((((---(((...--------.(..(((.((((((.((.((((.(......).)))---).)))))))))))..)......)))))))))......(((((.....)))))... ( -25.20) >DroYak_CAF1 945 116 - 1 AAAAAAAAGA---AAGAACCCUCCUUCCCAACUGAGCACUUAGAACAGCGACCCACUUGGCUGCUGCUCAAGUGCCAGCGGAACAUAUUU-UUCGUAACCUACAUUUUUGGCAAAUGAAA ........((---((((.......((((...(((.((((((.((.(((((.((.....)).))))).))))))))))).))))....)))-)))........(((((.....)))))... ( -27.90) >consensus AAAAAAAAAA___AAAAAC________CCAACUGAGCACUUAGAACAGCGACCCACUUGGCU___GCUCAAGUGCCAGCGGAACAUAUUU_UUUGUAACCUACAUUUUUGGCAAAUGAAA ...........................(((((((.((((((((...(((.(......).)))....)).))))))))).((.(((........)))..)).......))))......... (-16.77 = -17.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:45 2006