Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,413,865 – 1,413,978 |
Length | 113 |
Max. P | 0.627028 |
Location | 1,413,865 – 1,413,978 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.56 |
Mean single sequence MFE | -26.19 |
Consensus MFE | -19.34 |
Energy contribution | -19.37 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.20 |
Mean z-score | -0.81 |
Structure conservation index | 0.74 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1413865 113 + 22224390 GUAGUACUGCUGCUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAUACAAUAGAAACAUGUGUUAAAAAGCUUAAU-GAUU ((((.....)))).(((((....(((((.....))).((((.(((((....))))).....(((((...((-(...--.....))))))))))))..........))....)-)))) ( -28.20) >DroVir_CAF1 4318 105 + 1 AUAGUAUUGCUGCUGAUCCGGAUGCGGCUUGAUGCCCACGUAAUUUCUCGAGCAGCGAUUGUUCUUUAUAAAGGG-AAAACA-----CAAAUAAACUCUUUGAA------CUCGUUU .....(((((((((((.....(((.(((.....)))..)))......)).))))))))).((((.....((((((-......-----........)))))))))------)...... ( -21.64) >DroSec_CAF1 20307 108 + 1 GUAAUACUGCUGUUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAU-----AGAAACAGGUGUUAAAAAGCUUAAU-AAUU .((((((..(((((.((((((......)))))).(((((((((((((....)))))((....))))).)))-))..--....-----...)))))))))))...........-.... ( -27.30) >DroSim_CAF1 10921 108 + 1 GUAGUACUGCUGUUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAU-----AGAAACAGGUGUUAAAAAGCUUAAU-AAUU .........(((((.((((((......)))))).(((((((((((((....)))))((....))))).)))-))..--....-----...))))).((((((.....)))))-)... ( -25.20) >DroEre_CAF1 15710 90 + 1 GUAGUACUGCUGCUGGUCGGGAUGGGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUACUCUACAAUU-AAAA--AUAA-----CGAAUCC-------------------GAUU ((((.....)))).(((((((.(.((((.....)))..(((((((((....)))))((....))))))...-....--....-----).).)))-------------------)))) ( -26.60) >DroYak_CAF1 11836 97 + 1 GUAGUACUGCUGCUGGUCGGGAUGGGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUGUUCUACAAUU-GGAA--AUAA-----AGAAACA-----------GCUCACU-GGUU (((....))).((..((.(((.((...(((....(((((((((((((....)))))((....))))).)))-))..--...)-----))...))-----------.))))).-.)). ( -28.20) >consensus GUAGUACUGCUGCUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACAAUU_GGAA__AUAA_____AGAAACA_GUGUUAAAA_GCUUAAU_GAUU ((((...(((((((.(.((.(((..(((.....)))......))).))).)))))))......)))).................................................. (-19.34 = -19.37 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006