Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,636,628 – 12,636,736 |
Length | 108 |
Max. P | 0.540438 |
Location | 12,636,628 – 12,636,736 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 69.57 |
Mean single sequence MFE | -38.65 |
Consensus MFE | -15.38 |
Energy contribution | -15.78 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.46 |
Mean z-score | -1.70 |
Structure conservation index | 0.40 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12636628 108 + 22224390 AAACUGGGCAACCAGCGGAAUCAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGUCUGCAAAUGCAAUUGGUAUUGGGCGAAUCGUAUCAGGAU ...(((((((.(((((((.....))).))))........((....))..)))))))....(((..(((..(((.(((((.....)))))..)))...)))..)))... ( -33.60) >DroVir_CAF1 6862 105 + 1 ACGUUGGCUGCUCAGCGUGAGCAUUGCCUGCAGCAGUUGAACCAGUUGCUGCCGCGUCAGCUGUCGCAGCUGCAGCAGCGUCUGUUGCACGGCAGC---GAUGCGGCG ..((.((((((((.....)))))..))).))((((..((...))..))))((((((((.(((((((....((((((((...)))))))))))))))---)))))))). ( -54.70) >DroSec_CAF1 14891 108 + 1 AAACUGGGCAGCCAGCGGGAUCAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGUCGUCUGCAAAUGCAAUUGGUAUUGGGCGAAUCAUAUCAGGAU ...(((((((.(((((((.....))).))))........((....))..)))))))....((((.((((((...(((((.....)))))))))))......))))... ( -32.90) >DroEre_CAF1 14442 108 + 1 AAGCUGAGCAGCCAGCAGGAACACAGCCUGGAACAGCUGAGGAAACUAAUGCCUGGACCACUGGGACGCCUCCAAAUGCAAUUGGUGUUGGGCGAGUCAUAUCAGGAG ...((((....((((.(((.......)))((..((((..((....))...).)))..)).))))..(((((((((......))))....))))).......))))... ( -30.60) >DroYak_CAF1 5060 108 + 1 AAGUUGAGCAGCCAGCGGGAACAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGACUGCAAAUGCAAUUGGUACUGGGUGAAUCGUAUCAGGAU .......(((.(((((((.....))).))))..((((((((....))....(((((....))))).))))))....)))..(((((((.((.....)))))))))... ( -30.50) >DroMoj_CAF1 6701 105 + 1 UCGCUGGCCUCCCAGCGUGACCAUUGCCUGCAGCAGCUGAAUCAGCUGAUGCCGCAGCAGCUCUCGCAGCUGCAGCUGCGCCUUCUGCACGGCAGC---GAUGCGGCA .((((((....)))))).......((((.(((.((((((...)))))).(((((..((((....((((((....))))))....)))).)))))..---..))))))) ( -49.60) >consensus AAGCUGGGCAGCCAGCGGGAACAUUGCCUGGAACAGUUGAGGAAACUAAUGCCCGGACAACUGGGACGGCUGCAAAUGCAAUUGGUACUGGGCGAAUC_UAUCAGGAU ..(((((....)))))..........(((((...((((.....))))..(((((((.(((.((...............)).)))...))))))).......))))).. (-15.38 = -15.78 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:41 2006