Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,621,902 – 12,621,994 |
Length | 92 |
Max. P | 0.851986 |
Location | 12,621,902 – 12,621,994 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 59.24 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -10.35 |
Energy contribution | -10.29 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.52 |
Mean z-score | -1.75 |
Structure conservation index | 0.45 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12621902 92 - 22224390 UAUAUGGGAGAGAUAC-------AUCGGAUAAGAUCCG---AUAGCGAUAGAUAGAACAAGUUCCAAAACAAAAAACAAAUGCUUGUUCUCGGACCUAAUCA---- ....((((........-------(((((((...)))))---))..........(((((((((...................)))))))))....))))....---- ( -19.61) >DroPse_CAF1 40151 88 - 1 U----GGGGCCCACAACUUAUGGAUCUGAUCUGAUCCGUGUAUCCGGGCCGGUAUAAUAAGUUCCAAU-GG-----CAAAUGUUUGUG--UGUACCUAUG------ .----..(((((......((((((((......)))))))).....)))))(((((((((((.......-..-----......))))).--))))))....------ ( -26.66) >DroAna_CAF1 14778 103 - 1 UAUAUAGACGAUAUAGUACUUGAUUCUGAUCAGAUCAAGGAACAGAACGAGAGAAAACAAGUUCCAAAAGGCAAAACA-AUGCUUGUU--UGUACCUAAUAAAGAA ..(((((((.........((((.(((((.((........)).))))))))).................(((((.....-.))))))))--))))............ ( -18.20) >DroPer_CAF1 53473 88 - 1 U----GGGGCCCACAACUUAUGGAUCUGAUCUGAUCCGUGUAUCCGGGCCGGUAUAAUAAGUUCCAAA-GG-----CAAAUGUUUGUG--UGUACCUAUG------ .----..(((((......((((((((......)))))))).....)))))((((((........((.(-((-----(....)))).))--))))))....------ ( -27.20) >consensus U____GGGGCACACAACUUAUGGAUCUGAUCAGAUCCGUGUAUACGGGCAGAUAUAACAAGUUCCAAA_GG_____CAAAUGCUUGUG__UGUACCUAAG______ .....(((((((......((((((((......)))))))).....)))).......((((((...................)))))).......)))......... (-10.35 = -10.29 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:39 2006