Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,616,621 – 12,616,724 |
Length | 103 |
Max. P | 0.704294 |
Location | 12,616,621 – 12,616,724 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 69.21 |
Mean single sequence MFE | -18.20 |
Consensus MFE | -8.19 |
Energy contribution | -7.03 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.28 |
Mean z-score | -2.29 |
Structure conservation index | 0.45 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12616621 103 - 22224390 AAUAACAUUUGCGUUCCGCUUUUCGUUUUGCACAAAAUGAAUUUUGUUGUAGGAAGCUACAUAGAAAUUAAAAAAAAAAUAAAGAAAGAGGAAAUGAAACUGU ....(((.((...((((.(((((((((((....))))))((((((..(((((....)))))..))))))..............))))).))))....)).))) ( -19.20) >DroSec_CAF1 5974 86 - 1 AAUAACAUUUGCGUU------------UCGCAGAAAAUGAAUUUUGUUGUAGGAAGCUA--UAGAAA---AAAAAGAAAAAAAAAAAGAGGAAAUGAAACUGU ....(((.((.((((------------((((((((......))))))(((((....)))--))....---....................)))))).)).))) ( -12.10) >DroEre_CAF1 6527 86 - 1 AAUAACAUUUGCGUUCCGCA--GCGUUUUGCGCAAAAUUAAUUUCGCUGUAGGUAACUG--CGGGAG---AAAAG----------CAAUGGAAAUGAAACUGU .....(((((.((((..((.--(((.....)))........((((.((((((....)))--))))))---)...)----------))))).)))))....... ( -23.30) >consensus AAUAACAUUUGCGUUCCGC____CGUUUUGCACAAAAUGAAUUUUGUUGUAGGAAGCUA__UAGAAA___AAAAA_AAA_AAA_AAAGAGGAAAUGAAACUGU .....((((((((...((.....))...)))..........(((((...(((....)))..))))).........................)))))....... ( -8.19 = -7.03 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:38 2006