Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,610,046 – 12,610,137 |
Length | 91 |
Max. P | 0.656619 |
Location | 12,610,046 – 12,610,137 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 96.40 |
Mean single sequence MFE | -21.55 |
Consensus MFE | -20.50 |
Energy contribution | -20.38 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.57 |
Structure conservation index | 0.95 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12610046 91 + 22224390 UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUA--UAUGCUAUAUCUGCUGGCUCUACCGA ..(((((((..((.(..(....)..)....))..)))))))........((((((.(((.(((((--.....))))).)))....)))))).. ( -22.50) >DroSec_CAF1 8015 93 + 1 UUGAUGAGAUUGUUCUGGGUUCUUGGUGUUGCUUACUCAUUUAUACUUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUCUGCUGGCUCUACCGA ..((((((...((.(..(....)..)....))...))))))........((((((.((....(((.((((...)))).)))..)))))))).. ( -17.60) >DroSim_CAF1 9414 93 + 1 UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUCUGCUGGCUCUACCGA ..(((((((..((.(..(....)..)....))..)))))))........((((((.((....(((.((((...)))).)))..)))))))).. ( -22.50) >DroEre_CAF1 8393 91 + 1 UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAGUGUA--UAUGCUAUAUCUGCUGGCUCUACCGA ..(((((((..((.(..(....)..)....))..)))))))........((((((.((.(((..(--(((...))))..))).)))))))).. ( -23.60) >consensus UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUA__UAUGCUAUAUCUGCUGGCUCUACCGA ..(((((((..((.(..(....)..)....))..)))))))........((((((.(((.(((((.......))))).)))....)))))).. (-20.50 = -20.38 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:35 2006