Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,602,521 – 12,602,639 |
Length | 118 |
Max. P | 0.518674 |
Location | 12,602,521 – 12,602,639 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -23.49 |
Consensus MFE | -16.43 |
Energy contribution | -16.81 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.70 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12602521 118 - 22224390 GAGGAUGCCAUAAAAAAAAAAAACCUUAUCGCGACGGCAAAUUGGCAAG-AAAUUCGUCACAAAUUCAAUUUCCGAUACCGGAAUUGGUAACGCA-AACAUCAUAAACAUAAGUUUAUGA ..(..(((......................(.((((((......))((.-...)))))).)....((((((.(((....)))))))))....)))-..).((((((((....)))))))) ( -23.00) >DroSec_CAF1 1296 110 - 1 GAGGGUGCCAUAAAAA--AAAAACCUUAUCGCAACGGC--------AAGAAAAUUCGUCACAAAUUCAAUUUCCGAUACCGGAAUUGGUAUUGCAAAACAUCGUAAACAUAAGUUUAUCA .(((((..........--....)))))...((((.(((--------..........)))......((((((.(((....)))))))))..))))........((((((....)))))).. ( -17.94) >DroSim_CAF1 1972 115 - 1 GAGGGUGCCAUAAAAA---AAAACCUUAUCGCGACGGCCAAUUGGCAAG-AAAUUCGUCACAAAUUCAAUUUCCGAUACCGGAAUUGGUAACGCA-AACAUCAUAAACAUAAGUUUAUCA .(((((..........---...)))))...(((...(((((.((((((.-...)).))))..........(((((....))))))))))..))).-......((((((....)))))).. ( -24.32) >DroEre_CAF1 1576 112 - 1 GAGGGUGCAAUAAA------AAACCUUAUCGCGACGUUAAGUUGUUGAG-GAAUUCGUCACGCCUUCAAUUUCCGAUGCCGGAAUUGGCAACGCA-UACGUCAUAAACAUUGGUUUAUCA ((.(((((......------...(((((..(((((.....)))))))))-)..........(((......(((((....)))))..)))...)))-).).))((((((....)))))).. ( -28.70) >consensus GAGGGUGCCAUAAAAA___AAAACCUUAUCGCGACGGCAAAUUGGCAAG_AAAUUCGUCACAAAUUCAAUUUCCGAUACCGGAAUUGGUAACGCA_AACAUCAUAAACAUAAGUUUAUCA ((((...................))))...(((..(((.((((........)))).)))......((((((.(((....)))))))))...)))........((((((....)))))).. (-16.43 = -16.81 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:32 2006