Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,600,600 – 12,600,710 |
Length | 110 |
Max. P | 0.863005 |
Location | 12,600,600 – 12,600,710 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -17.55 |
Energy contribution | -20.68 |
Covariance contribution | 3.13 |
Combinations/Pair | 1.11 |
Mean z-score | -2.99 |
Structure conservation index | 0.50 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12600600 110 - 22224390 GUUUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUG--CUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCACGUA .....(((((((.....)))(((((..((((((((((((((((..--....)))))...)))))))))))....)))))...))))....(((............))).... ( -32.10) >DroSec_CAF1 9426 110 - 1 GCGUUAAGUGCUGAUAAAGUGGGAGGAAGGGGAAAUGGGCAAUUG--GUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA ((((..((((..(((((((((((((((((((((((((((((((..--....)))))...)))))))))))..))))))))))....)))))...)))).....))))..... ( -43.10) >DroSim_CAF1 8900 112 - 1 GUGUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUGCUGUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA .....(((((((.....)))(((((..(((((((((((((....)).(((.....))).)))))))))))....)))))...))))...((((............))))... ( -33.70) >DroEre_CAF1 9483 108 - 1 GUGUUAAGUGGCGAUAAAGAGGAGGAAAGGGG-AAAUGGCAAUUG--CUG-GUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCUCUCUUUUAUGCAAGCA ((((.(((.((((((((((.((((((((((((-(((((((...((--(..-...))).)))))))))))).)))).))).))....))))))))....)))..))))..... ( -40.20) >DroYak_CAF1 8431 92 - 1 GUGUUAAGUGCUGAUAAAAAGAGGGA--GGGA-AAUAGGCAAUUG--CUG-UGUG--------------UGUUCCUUCCACUACUUUUAUUGCACUCUCUUUUAUGCCAGCA ......(((((.(((((((..(((((--((((-((((.(((....--.))-).))--------------).)))))))).))..))))))))))))................ ( -28.10) >consensus GUGUUAAGUGCUGAUAAAGAGGGAGAAAGGGGAAAUGGGCAAUUG__CUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA ((((.(((.((.(((((((.(((((..((((((((((((((((........)))))...)))))))))))....))))).....))))))))).....)))..))))..... (-17.55 = -20.68 + 3.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:31 2006