Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,600,038 – 12,600,154 |
Length | 116 |
Max. P | 0.595718 |
Location | 12,600,038 – 12,600,154 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -14.84 |
Energy contribution | -14.52 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.26 |
Mean z-score | -1.73 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12600038 116 + 22224390 ACUAACAUAACGCGCAAGUGUUAAGACUGAAAAUGGAAAUAGGGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAGACAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU .......((((((....))))))....((((..((.(.((((...((((...((.......))...........(((((((...)))))))----.)))).)))).).))...))))... ( -21.40) >DroSec_CAF1 8868 116 + 1 ACUAAAAUGACGCGCAAGUGUUAAAACUGAAAAUGGAAAUAGUGGCAGCAAACCGAAUAAAGGAAAUGGCAAAAAAAUAAAGAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU .......((((((....))))))....((((..((.(.(((((..((((...((.......))...........((((((.....))))))----.))))))))).).))...))))... ( -20.70) >DroSim_CAF1 8340 116 + 1 ACUAAAAUGACGCGCAAGUGUUAAAACUGAAAAUGGAAAUAGUGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAAAGAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU .......((((((....))))))....((((..((.(.(((((..((((...((.......))...........((((((.....))))))----.))))))))).).))...))))... ( -20.70) >DroEre_CAF1 8951 120 + 1 ACUGAAGUGACAUUCAAGUGUUAAGGCAGAAAAUGGGAAUAGUUGCAGCGAACUAAAUAAAAGAAAUGGCAAACAAAAGAACCAUUUAUUUACGUAGCUGAAUAUAUGCAGCAUUCAAAU .(((...((((((....))))))...))).......((((.((((((.....(((..((((..((((((............)))))).))))..))).........)))))))))).... ( -23.74) >DroYak_CAF1 7869 116 + 1 ACCAAAAUUACAUUCAAGUGUUAAGGCAGAAGGUGGAAAUAGUUGCAGCGAACUAAAUAAAAGAAAUGGCAAACAAAUAAACAAUUUGCUU----AACUGUUUGAAUGCAGCAUUCAAAU ..........(((((((..((((((.((((..((........((((......((.......)).....))))........))..)))))))----)))...)))))))............ ( -19.19) >consensus ACUAAAAUGACGCGCAAGUGUUAAGACUGAAAAUGGAAAUAGUGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAAACAAUUUAUUU____AGCUGAUUAUAUGCAGCAUUCAAAU .......((((((....)))))).....(((..((.(.((((...((((.....(((((((.......................))))))).....)))).)))).).))...))).... (-14.84 = -14.52 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:30 2006