Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,595,405 – 12,595,645 |
Length | 240 |
Max. P | 0.580115 |
Location | 12,595,405 – 12,595,525 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.97 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -28.40 |
Energy contribution | -29.02 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12595405 120 + 22224390 UUCAUUCAUAAGCUUCUUGAUGAGAUUAGCGAUAUCCUCACGCUUCUUGGUUACUGUGAGCAGGUCAAACCAAUUGCUCAGCUCCUUAAUGGGCAGUGUAUAGUCGUUGAUGGGUUUUGU (((((.((.........)))))))(((((((((.....(((((...((((((.(((....)))....))))))..))...((.((.....)))).)))....)))))))))......... ( -28.30) >DroSec_CAF1 3497 120 + 1 UUCAUUCAUCAGAUUCUGGAUGAGAUUGGCGAUAUCCUCGCGCUUCUUGGUUACUGUGAGCAGGUCAAACCAAUCGAUCAGCUCCGUAAUGGGCAGCUUAUAGUUAACGAUGGGUUUUGU ((((((((........))))))))....((((.....))))(((..(((...(((((((((.((((.........)))).((((......)))).)))))))))...)))..)))..... ( -34.70) >DroEre_CAF1 4730 120 + 1 CUCAUCCAUCAGAUUCUGGAUGAGAUUGGCGAUAUCCUCGCGCUUCUUGGUUACCGUGAGCGGCUCAAACCAAUUUCUCAGCUCCCUAAUGGGCAGUCUAUAGUCUCUGAUGGGUUUCGU ...((((((((((..(((..(((((...((((.....)))).....((((((.(((....)))....))))))..)))))((((((....))).)))...)))..))))))))))..... ( -40.50) >DroYak_CAF1 3746 120 + 1 CUCAUCCAUCAGAUGCUGGAUGAGUUUGGCGAUAUCCUCGCGCUUCUUGGUCACCGUCAGUGGAUCGAACCAAUUUCUCAGCUCCCUAAUGGGCAGUCUAUAGUCUCUGAUGGGUGUGGU (.(((((((((((.((((..((((.(((((((.....)))).....((((((..(....)..))))))..)))...))))((((((....))).)))...)))).))))))))))).).. ( -42.70) >consensus CUCAUCCAUCAGAUUCUGGAUGAGAUUGGCGAUAUCCUCGCGCUUCUUGGUUACCGUGAGCAGGUCAAACCAAUUGCUCAGCUCCCUAAUGGGCAGUCUAUAGUCUCUGAUGGGUUUUGU ...((((((((((..(((..((((....((((.....)))).....((((((.(((....)))....))))))...))))((((((....))).)))...)))..))))))))))..... (-28.40 = -29.02 + 0.63)
Location | 12,595,525 – 12,595,645 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -32.67 |
Energy contribution | -34.05 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.14 |
Mean z-score | -1.42 |
Structure conservation index | 0.80 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12595525 120 - 22224390 AAUGCGCUGGCGCAUGUCUUUAACAAGGAUAAUAUGCCCGGUCAUAGUGUGGAGGUGCCGCAACAGCAGAAUCUUACAGAUUGCGGCCUCUAUCUGCUGCAAUAUGUGGAGCAAUUCUUC ..((((((((.((((((..((......))..))))))))))).....(((((.....)))))...)))((((((((((.((((((((........)))))))).))).)))..))))... ( -37.20) >DroSec_CAF1 3617 120 - 1 AGACAGCGGGCGCGCAUCUUCAACAGGGAUAAUAUGCCCGGUCUUAUUGUGGAGGUGCCGCAGCAGGAGAAUCUCACCGAUUGCGGCCUCUAUCUGCUGCAGUAUGCGGAGCAAUUCUUC .....((..(((.(((((((((((.(((........))).)).......)))))))))))).)).((((((((((..((((((((((........)))))))).))..)))..))))))) ( -43.91) >DroEre_CAF1 4850 120 - 1 AAUGCGCAGGCGCAUGUCUUCAACAAGCACAAUAUGCCCGCUCAUAGAGUGGAGGUGCCGCAGCAGGAGAAUCUCACUGAUUGCGGCCUCUAUCUGCUGCAAUAUGUGGAGCAAUUCUUC ..(((((.(((((.((((((....))).)))......((((((...))))))..))))))).)))((((((((((((..((((((((........))))))))..)).)))..))))))) ( -41.70) >DroYak_CAF1 3866 120 - 1 AAUGCGCAGGCGCAUAUCUUCACCAAGGACAACAUGCCCGCUCAUCGAGUGGAGGUGCCGCAGCAGGAGAAUCUCACCGAUUGCGGCCUCUAUCUGCUGCAGUAUGUGGAGCAAUUCUUC ..(((((.(((((...((((.....))))........((((((...))))))..))))))).)))((((((((((..((((((((((........)))))))).))..)))..))))))) ( -40.80) >consensus AAUGCGCAGGCGCAUAUCUUCAACAAGGACAAUAUGCCCGCUCAUAGAGUGGAGGUGCCGCAGCAGGAGAAUCUCACCGAUUGCGGCCUCUAUCUGCUGCAAUAUGUGGAGCAAUUCUUC .....((.(((((.((((((.....))))))......((((((...))))))..)))))))....((((((((((....((((((((........)))))))).....)))..))))))) (-32.67 = -34.05 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:24 2006