Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,592,066 – 12,592,186 |
Length | 120 |
Max. P | 0.543963 |
Location | 12,592,066 – 12,592,186 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -50.55 |
Consensus MFE | -38.35 |
Energy contribution | -38.72 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.30 |
Mean z-score | -2.07 |
Structure conservation index | 0.76 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12592066 120 - 22224390 GUGUGGUCCAGCUUGAAUCUGCCAUCGGGGCUGGGCUGUGCCACAGUUCUCUAUCCAGAGGCAGCUGCUCUGCAUGCGGCCACCAUUCUGGGGCUGGGCAACUUCAUGGUCUGGUCGAAA .(((((..(((((((..((((....))))..)))))))..))))).(((.....(((((((..(((((.......)))))..))..)))))(((..(((.........)))..)))))). ( -46.80) >DroPse_CAF1 893 120 - 1 GUCUGGUCCAGCCUGAAUCUGCCCUCGGGCCUCGGCUGUGCCACCGUUCUCUAUCCGGAGGCGGCGGCCCUACAUGCCGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCCAGA .(((((.((((..((((..(((((..((((((.(..((.(((.(((.........))).)))((((((.......))))))..))..).)))))))))))..))))....)))).))))) ( -58.40) >DroGri_CAF1 4414 120 - 1 GCAUGGUCCAGCCUCAAUUUGCCAUCGGGUCUGGGCUGUGCCACCGUCUUCUAUCCGGAGGCAGCCGCAUUACAUGCGGCAACCAUUUUGGGUCUGAGCAACUUUAUGAUUUGGUCCAAG ((((((((((((((............))).)))))))))))....((((((.....)))))).(((((((...))))))).......((((..(....((......))....)..)))). ( -44.90) >DroEre_CAF1 79 120 - 1 GUCUGGUCCAGCUUGAAUCUGCCAUCCGGCUUGGGCUGUGCCACCGUCCUCUAUCCGGAGGCAGCUGCUCUCCAUGCGGCCACCAUUUUGGGGCUGGGCAACUUCAUGGUCUGGUCCAAG ...(((.((((((((((..((((....((...((((.(((((.(((.........))).)))).).)))).))...(((((.((.....)))))))))))..)))).)).)))).))).. ( -49.20) >DroMoj_CAF1 3831 120 - 1 GCCUGGUCGAGCCUGAAUCUGCCGUCGGGCCUGGGCUGUGCCACUGUGCUCUAUCCGGAGGCAGCGGCGCUGCACGCGGCCACCAUUCUGGGCCUCAGCAACUUUAUGAUCUGGUCCAAG ...((((((.((((((........))))))....((.(((((.((((.((((....)))))))).))))).))...))))))......((((((....((......))....)))))).. ( -47.90) >DroPer_CAF1 715 120 - 1 GUCUGGUCCAGCCUGAAUCUGCCCUCGGGCCUCGGCUGUGCCACCGUUCUUUAUCCGGAGGCGGCGGCCCUACAUGCCGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCUAGA .(((((.((((..((((..(((((..((((((.(..((.(((.(((.........))).)))((((((.......))))))..))..).)))))))))))..))))....)))).))))) ( -56.10) >consensus GUCUGGUCCAGCCUGAAUCUGCCAUCGGGCCUGGGCUGUGCCACCGUUCUCUAUCCGGAGGCAGCGGCCCUACAUGCGGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCCAAA ...(((.((((..((((..((((..((((((..((.((((((.(((.........))).))))(((((.......)))))...)).))..))))))))))..))))....)))).))).. (-38.35 = -38.72 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:22 2006